DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment SCAP and disp

DIOPT Version :9

Sequence 1:NP_788277.1 Gene:SCAP / 35529 FlyBaseID:FBgn0033052 Length:1276 Species:Drosophila melanogaster
Sequence 2:NP_524734.2 Gene:disp / 44274 FlyBaseID:FBgn0029088 Length:1218 Species:Drosophila melanogaster


Alignment Length:469 Identity:89/469 - (18%)
Similarity:166/469 - (35%) Gaps:119/469 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly   241 PEYGCLLLSPANLWTQNSQNFTRDTNILNTIFQY-HNLQ-------------KSKVSAAEMLFGL 291
            |.|..:|.:.::.:...:::.|....:|...::| |:|:             ..:.....::|.:
  Fly   311 PNYAAMLANKSSCFDLTTEDVTSLHTLLLGCYEYFHDLKMDNHCNEIPHCRAPEECKRLNIVFNV 375

  Fly   292 PMQDTGFKRYPLRARSRIIQYA------------LTLFLKHNDMEYLDTLKEKLLRHYPPLPLAS 344
            ....|.|........:..::||            |.||.:..|:|.::.|.|.:..   .|.|.:
  Fly   376 LNFLTDFSFIKSNDSNVYLKYAMIFIPVAQSNRLLPLFHEWEDVELINELVEVVAM---DLGLEN 437

  Fly   345 ASAEE--PTTITYIFYPGEYRMWELVPYT------------VAFMLVFAYVYFS-VRKIDVFRSR 394
            ....|  .|.:..:...|.:.|..:..||            :.|.|..||.::: |.:.:.|...
  Fly   438 ELFNELLLTDVWLVSLGGTFVMASVWLYTGSAFITLMSCVAICFSLGLAYFFYAIVLEFEFFPYM 502

  Fly   395 FLLALCSVITTAGS---LAMSLGLC-----FFFGLTISLQSKDIFPYLVILVGLENSLVITKSVV 451
            .|||:..:|.....   |.:.:..|     |....|::.||:...|      .||||        
  Fly   503 NLLAVVVIIGIGADDVFLFLKIWHCVLTERFSNRCTLTTQSQSALP------TLENS-------- 553

  Fly   452 SMDETFDVKIRVAQALSKEGWHISKTLLTEITILTIGLATFVPVIQEFCIFAIVGLLSDFMLQML 516
              |.|..::..:|..:......:..|.||.........::.:..|:.|.|||...::::::|.:.
  Fly   554 --DHTESLENIMALTMRHAAASMFVTSLTTAGAFYASYSSSITAIKCFGIFAGTVVVTNYLLMIT 616

  Fly   517 LFSTILAMNIKRTEYTAEAKHLP---KMLLSCTQGAGR--QDFR----------------FFGAA 560
            .....::: ::|...|..:.|.|   |::.:|.:...|  |.|.                .|||.
  Fly   617 WLPASVSI-MERLFATRMSCHHPMSIKLIHACKKSINRFCQMFEECITKSIMNYAYLWLLIFGAL 680

  Fly   561 PALPPFV----PGTFQRSQSHPKLCFA-DPASVSDRTSLVNGHSSPEQRIPKRIKIVNFW----- 615
            .|....:    ||.....:||.:|..: .|..|         :||.:|:         ||     
  Fly   681 GASSAVIVFWYPGLQLPEKSHFQLFVSKHPFEV---------YSSLKQQ---------FWFEKPL 727

  Fly   616 -ARTRFFQRAFMIW 628
             |...|......:|
  Fly   728 QAYENFKMHMHFVW 741

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SCAPNP_788277.1 Sterol-sensing 390..542 CDD:289145 33/162 (20%)
WD40 <878..1227 CDD:225201
WD40 878..1185 CDD:295369
WD40 repeat 887..942 CDD:293791
WD40 repeat 945..983 CDD:293791
WD40 repeat 989..1070 CDD:293791
WD40 repeat 1079..1114 CDD:293791
WD40 repeat 1120..1157 CDD:293791
WD40 repeat 1162..1196 CDD:293791
WD40 repeat 1201..1233 CDD:293791
dispNP_524734.2 Patched <444..1111 CDD:280598 66/333 (20%)
MMPL 457..627 CDD:304422 36/186 (19%)
TM_PBP1_branched-chain-AA_like 964..>1109 CDD:294309
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45460573
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
10.930

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