Sequence 1: | NP_788277.1 | Gene: | SCAP / 35529 | FlyBaseID: | FBgn0033052 | Length: | 1276 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_001002025.1 | Gene: | Npc1l1 / 432367 | RGDID: | 1303135 | Length: | 1331 | Species: | Rattus norvegicus |
Alignment Length: | 955 | Identity: | 174/955 - (18%) |
---|---|---|---|
Similarity: | 306/955 - (32%) | Gaps: | 322/955 - (33%) |
- Green bases have known domain annotations that are detailed below.
Fly 59 VSHFYYKHGLFLSSYPTCASSIAFMAILLSCYPLINIPLPGTIPTKI-VVPYETGSGSLSWH--- 119
Fly 120 -------------SLNTSS-------------------------TTPQEPHPSGEPWPPEPQ--- 143
Fly 144 -----------VLNSSTTDRSPPPLLPWAQSSPAFFYV---QQITLRTSVLPWTEGMQLMDAFRA 194
Fly 195 PLHEVFKLLEIVRNHQSSENKRTLEHNCLHVDNVKRGTHGQLDQIFPEYGCLLLSPANLWTQNSQ 259
Fly 260 NFTRDTNILNTIFQYHNLQKSKVSAAEMLFGL---PMQDTGFKRYPLRARSRIIQYALTLFLKHN 321
Fly 322 DMEYLDTLKEKLLRHYPPLPLASASAEEPTTITYIFYPGEYRMWELVPYTVAFMLVFAYV----- 381
Fly 382 -YFSVRKIDVFRSRFLLALCSVITTAGSLAMSLGLCFFFGLTISLQSKDIFPYLVILVGLENSLV 445
Fly 446 ITKSVVSMDETFDVKIRVAQALSKEGWHISKTL-----------LTEITILTIGLATFVPVIQEF 499
Fly 500 CIFAIVGLLSDFMLQMLLFSTILAMNIKRTEYTAEAKHLPKMLLSCTQGAGRQDFRFFGAAPALP 564
Fly 565 P---------------FVPGTFQRSQSHPKLCFADPASVSDRTSL----------VNGHSSPEQR 604
Fly 605 IPKRIKIVNFWARTRFFQRAFMIWMIVWICSIVYNSGYLEQLFSMQSNGTMTAT--------LEL 661
Fly 662 QRRLQ-------------AGRGAVSSFFEGWQADGQRATSAPSGSGFSTPIKAPLAID------- 706
Fly 707 ---------------INETAEEMMRLRYPSFDLNYFLSNFHWSTIMKQYNISL-SGHYVTLLPTI 755
Fly 756 RLS---HAIAPELATL---LRNPQEQLQQNFQWKALAAALDPLDFNDDDVRRE------------ 802
Fly 803 --SPMVMAEGLPLVPKSPMEIFFAILLCCISIFVLCYTMVVFYRC 845 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
SCAP | NP_788277.1 | Sterol-sensing | 390..542 | CDD:289145 | 38/162 (23%) |
WD40 | <878..1227 | CDD:225201 | |||
WD40 | 878..1185 | CDD:295369 | |||
WD40 repeat | 887..942 | CDD:293791 | |||
WD40 repeat | 945..983 | CDD:293791 | |||
WD40 repeat | 989..1070 | CDD:293791 | |||
WD40 repeat | 1079..1114 | CDD:293791 | |||
WD40 repeat | 1120..1157 | CDD:293791 | |||
WD40 repeat | 1162..1196 | CDD:293791 | |||
WD40 repeat | 1201..1233 | CDD:293791 | |||
Npc1l1 | NP_001002025.1 | NPC1_N | 30..283 | CDD:293023 | |
2A060601 | 32..1267 | CDD:273337 | 174/955 (18%) | ||
Sterol-sensing | 662..814 | CDD:289145 | 41/179 (23%) | ||
Blue background indicates that the domain is not in the aligned region. |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 1 | 0.900 | - | - | E1_KOG1933 | |
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 0 | 0.000 | Not matched by this tool. | |||
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 0 | 0.000 | Not matched by this tool. | |||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 0 | 0.000 | Not matched by this tool. | |||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
1 | 0.900 |