DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment SCAP and scap

DIOPT Version :9

Sequence 1:NP_788277.1 Gene:SCAP / 35529 FlyBaseID:FBgn0033052 Length:1276 Species:Drosophila melanogaster
Sequence 2:NP_001120162.1 Gene:scap / 100145201 XenbaseID:XB-GENE-996521 Length:1319 Species:Xenopus tropicalis


Alignment Length:1447 Identity:429/1447 - (29%)
Similarity:638/1447 - (44%) Gaps:371/1447 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly    59 VSHFYYKHGLFLSSYPTCASSIAFMAILLSCYPLINIPLPGTIPTKIVVPYETGSGSLSWHSLNT 123
            :|..:|.|||..:|||.....:..:.||.|||||:.:|||||.|.:.|.|            :..
 Frog    11 ISRAFYSHGLLCASYPIPIIILTALCILASCYPLLKLPLPGTGPVEYVTP------------VRD 63

  Fly   124 SSTTPQEPHPSGEPWPPEPQVLNSSTTDRSPPPLLPWAQSSPAFFYVQQITLRTSVLPWTEGMQL 188
            .|..|.||.|.                |.|..|  .|....|. .|:||:.::..|.||.:....
 Frog    64 YSPPPLEPSPE----------------DHSDRP--DWYVGLPV-SYIQQVLVKAVVSPWDKDFLA 109

  Fly   189 MDAFRAPLHEVFKLLEIVRNH--QSSENKRTLEHNCLHVDNVKRGTHGQLDQIFPEYGCLLLSPA 251
            :|.||:||..||.|:|.:|||  :....:::||..||.|.::..|.....|:: ||:||||||||
 Frog   110 VDVFRSPLSRVFPLVEEIRNHVLREKSQEKSLEDVCLQVTDLLPGLKKLRDKL-PEHGCLLLSPA 173

  Fly   252 NLWTQNSQNFTRDTNILNTIFQYH--NLQKSKVSAAEMLFGLPMQDTGFKRYPLRARSRIIQYAL 314
            |.|..:.::|:.|.:::.||.|:.  .||.| .:..::|||:|.:.:|...|   .|.||:.||:
 Frog   174 NFWQNSQEHFSGDPDLIRTIHQHEPKTLQTS-ATLKDLLFGVPGKQSGVSLY---NRKRIVSYAI 234

  Fly   315 TLFLKHNDMEYLDTLKEKLLRHYPPLPLASASAEEPTT-ITYIFYPGEYRMWELVPYTVAFMLVF 378
            |:.|...|..:|::|:.:|.:.:|     |.::..|:. |.::.:..|..:.||:|....::::|
 Frog   235 TIALHRYDATFLNSLRSRLKQQHP-----STNSSAPSQHIVHVHFKEEIGIAELIPLVTTYIILF 294

  Fly   379 AYVYFSVRKIDVFRSRFLLALCSVITTAGSLAMSLGLCFFFGLTISLQSKDIFPYLVILVGLENS 443
            ||:|||.||||:.:|::.|||.:|:|...||.||:|||..||||.:|...:||||||:::||||.
 Frog   295 AYIYFSTRKIDLVKSKWGLALAAVVTVLSSLLMSVGLCTLFGLTPTLNGGEIFPYLVVVIGLENV 359

  Fly   444 LVITKSVVSMDETFDVKIRVAQALSKEGWHISKTLLTEITILTIGLATFVPVIQEFCIFAIVGLL 508
            ||:||||||.....:||:|:||.||.|.|.|.|.:.||:.|:.||..|.||.|||||:||:|||:
 Frog   360 LVLTKSVVSTPVDLEVKLRIAQGLSNESWFIMKNMATELGIILIGYFTLVPAIQEFCLFAVVGLV 424

  Fly   509 SDFMLQMLLFSTILAMNIKRTEYTAEAKHLPKMLLSCTQGAGRQDFRFFGAAPALPPFVPGTFQR 573
            |||.|||..|:|:|:::|:|.|.....|.:|                   |...:||..||. :|
 Frog   425 SDFFLQMFFFTTVLSIDIRRMELADLNKRMP-------------------AEACMPPPKPGA-KR 469

  Fly   574 SQSHPKLCFADPASVSDRTSLVNGHSSPEQRIPKRIKIVNFWARTRFFQRAFMIWMIVWICSIVY 638
            .:..|.|..|.|.:::.:.|     |....|:|||:::|.|:||||..||..|...:|||..:||
 Frog   470 YERQPALRPATPHTITLQPS-----SLRNLRLPKRLRLVYFFARTRLAQRIIMAGTVVWIGILVY 529

  Fly   639 NS-----GYLEQLFSMQS--------------------NGTMTATLE------LQRRLQAGRGAV 672
            ..     .||....:.||                    ...:.|...      |:.:.|..|..|
 Frog   530 TDPAGLRNYLTVQVTEQSPLGGAVMPPVPVPVLPASNPQSPLAAVFPTGSSQLLENQSQRDRKEV 594

  Fly   673 SSFFEGWQADGQRAT---SAPSGSGFSTPI----KAPLAIDINETAEEMMRLRYPSFDLNYFLSN 730
            .....| :.||....   |.|...|.....    ||...:......||..|.          ||.
 Frog   595 IDSLRG-RLDGSSRVWEESLPEDKGRERAAGKEDKAHTQVTWGPEDEETWRK----------LSF 648

  Fly   731 FHWSTIMKQYNISLSGHYVTLLPTIRLSHAIAPELATLLRNPQEQLQQNFQWKALAAALDPLDFN 795
            .||.|:...|||:|:..|:::||.|.::..:.|:..:..|:|||                     
 Frog   649 RHWPTLFSYYNITLAKKYISILPMIPVTIYLTPQEVSDARHPQE--------------------- 692

  Fly   796 DDDVRRESPMVMAEGLP---------------LVPKSPMEIFF---AILLCCISIFVLCYTMVVF 842
               .:...|.:..||.|               ...:.|.::..   |.|.....||::.: ..:.
 Frog   693 ---AQHSHPYLQREGKPEEAWVRVEAKGAEEAAKNQMPADVTLYKVAALGLASGIFLVLF-FFLL 753

  Fly   843 YRCICTRNYAEWRSSWH----ESEAP---YKQTEQILEGVPTQIAGHKHRIECLVSDGAYIISCC 900
            ||.:|.:||.: ....|    :.:.|   |..:....|.||..:.||...||||.|||..::|||
 Frog   754 YRLLCPKNYGQ-NGVPHGRRKKGDLPCDDYGYSPPETEIVPLVLRGHHMDIECLASDGMLLVSCC 817

  Fly   901 LKGQIRVWDARSGEQLTSISRSDI----------------------------------------- 924
            |.||||||||:||:.||.|.:..:                                         
 Frog   818 LAGQIRVWDAQSGDCLTIIPKPSLRRESSGVFEYQDNWEPTPECKYNPEDSLENGYHLKRRVPHP 882

  Fly   925 ----------------------------------------------------------------- 924
                                                                             
 Frog   883 SLFSDQPDLTSLIDTNFSEQPVGEEPGTRQRLPCIKQETPAIGYDFSSLVQKVYEEHEASSYGSF 947

  Fly   925 ------------QISQQR--------TDGQTLVRKLAV----------------------SPVWC 947
                        |:|..|        .||....||.:.                      |.||.
 Frog   948 PLVFPPAPYGQCQLSSGRRSRSPGGCLDGSCARRKSSAEETSGYCNGTSSPVLSWTESFESSVWS 1012

  Fly   948 LDYFDNLIAVGCANGRVELWESPAGLLKCAYQEDAKRNQGITHIHLNGDRVIVARLNGRLDFYRL 1012
            |....|||.||.:||.:|:|::..|.|:|:   :.....|||.:.....|::||||||.||||.|
 Frog  1013 LGLQGNLIVVGRSNGNLEVWDAIEGSLRCS---NCDGQSGITALVFLNHRIVVARLNGSLDFYCL 1074

  Fly  1013 ETYYKGKQIDWGFTSAYRRTHVRTGSTGSLGLMLQQQRCQQEASQKTTKEEMKITLEGVRLAHQQ 1077
            ::.....|:.  |..|..|::|.:....|...::..||...                 |..|||:
 Frog  1075 DSQKSSSQLQ--FRGAPNRSNVPSSPLYSTDDVIGCQRSHT-----------------VACAHQK 1120

  Fly  1078 PITCMQVVNDMVFTGSQDHTLKVYCLNKSDVEYTLHGHCGPVTCLFVDRWQPGTGGSGSQDGLLC 1142
            |||.::.....:.|||||||::||.|..:...:||.||.|.:|.:::|  :.....||.|||.:|
 Frog  1121 PITALKAAAGRLVTGSQDHTVRVYRLEDACCLFTLQGHSGGITAIYID--ETMVLASGGQDGAIC 1183

  Fly  1143 VWDLFTGACMYNIQAHDGAVSCLACAPSYVISLGTDERICVWERFQGNLLTTINIS-NAYSSLLM 1206
            :||:.||:.:.::..|.|.|:.|.|..|.|||.|.|:.||:|:|.....|.:|... ...|||.:
 Frog  1184 LWDVLTGSRVSHMFGHRGDVTSLLCTTSCVISSGLDDVICIWDRSTAIRLYSIQQDLGCGSSLGL 1248

  Fly  1207 LTPSLLVTSKMGSLIVWDVRTG--------------QPAREVKLDFANLQLCPKIMMLACDSVVC 1257
            ::.:||||...|.:..||:..|              ||||:             |::|...::||
 Frog  1249 ISDNLLVTGGQGCVSFWDIGYGDLLQTVYLGKCEEAQPARQ-------------ILVLDNAAIVC 1300

  Fly  1258 DYGNEIRVVRFPIVADK 1274
            |:|:|:.:|..|.|.:|
 Frog  1301 DFGSELSLVYVPSVLEK 1317

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SCAPNP_788277.1 Sterol-sensing 390..542 CDD:289145 79/151 (52%)
WD40 <878..1227 CDD:225201 133/497 (27%)
WD40 878..1185 CDD:295369 119/454 (26%)
WD40 repeat 887..942 CDD:293791 30/180 (17%)
WD40 repeat 945..983 CDD:293791 15/37 (41%)
WD40 repeat 989..1070 CDD:293791 21/80 (26%)
WD40 repeat 1079..1114 CDD:293791 14/34 (41%)
WD40 repeat 1120..1157 CDD:293791 12/36 (33%)
WD40 repeat 1162..1196 CDD:293791 14/33 (42%)
WD40 repeat 1201..1233 CDD:293791 14/45 (31%)
scapNP_001120162.1 2A060601 <11..>446 CDD:273337 189/475 (40%)
Sterol-sensing 306..452 CDD:372063 77/145 (53%)
WD40 795..826 CDD:197651 18/30 (60%)
WD40 <993..1195 CDD:225201 73/225 (32%)
WD40 repeat 1050..1086 CDD:293791 15/37 (41%)
WD40 1118..>1275 CDD:392136 60/158 (38%)
WD40 repeat 1123..1157 CDD:293791 13/33 (39%)
WD40 repeat 1162..1197 CDD:293791 12/36 (33%)
WD40 repeat 1204..1237 CDD:293791 13/32 (41%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 185 1.000 Domainoid score I3334
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H8160
Inparanoid 1 1.050 617 1.000 Inparanoid score I880
OMA 1 1.010 - - QHG48668
OrthoDB 1 1.010 - - D242783at33208
OrthoFinder 1 1.000 - - FOG0006370
OrthoInspector 1 1.000 - - oto102985
Panther 1 1.100 - - LDO PTHR46378
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R3741
SonicParanoid 1 1.000 - - X6092
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
1212.110

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