DRSC/TRiP Functional Genomics Resources

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Protein Alignment Strica and Casp6

DIOPT Version :9

Sequence 1:NP_001260718.1 Gene:Strica / 35528 FlyBaseID:FBgn0033051 Length:527 Species:Drosophila melanogaster
Sequence 2:NP_001258913.1 Gene:Casp6 / 83584 RGDID:70967 Length:277 Species:Rattus norvegicus


Alignment Length:271 Identity:75/271 - (27%)
Similarity:110/271 - (40%) Gaps:62/271 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly   306 TKNKLKPARVY-----------IFNHERFDNKNEF-------RKGSAQDVKVLRATFEQLKCKVE 352
            ::..|.||..|           |||||||     |       |:|:..|...|...|.:|..:|:
  Rat    10 SREVLDPAEQYKMDHKRRGTALIFNHERF-----FWHLALPERRGTNADRDNLTRRFSELGFEVK 69

  Fly   353 VITDATLVTIKKTVRMLQTKDFEDKSALVLVILSHGTRHDQIA--AKDDDYSLDDDVVFPILRNR 415
            ...|.....:...:..:.|....|....:.|.||||..:...|  ||.:..:|..  :|...:.:
  Rat    70 CFNDLRAEELLLKIHEVSTSSHVDADCFLCVFLSHGEGNHIYAYDAKIEIQTLTG--LFKGDKCQ 132

  Fly   416 TLKDKPKLIFVQACKG-------------DCQLGGF-----MTDAAQ----PNGSPNEILKCYST 458
            :|..|||:..:|||:|             |.|....     ..|||.    |.|:  :.|.|||.
  Rat   133 SLVGKPKIFIIQACRGSQHDVPVVPLDVVDHQTDKLDDNVTQVDAASVYTLPAGA--DFLMCYSV 195

  Fly   459 YEGFVSFR-TEDGTPFIQTLCEALNRSGKTSDIDTIMMNVRQVVKMQSKD----------RQIPS 512
            .||:.|.| |.:|:.:||.|||.|.|.|.:.:...::..|.:.|..:..|          :|:|.
  Rat   196 AEGYYSHRETVNGSWYIQDLCEMLARHGSSLEFTELLTLVNRKVSQRRVDFCKDPGAIGKKQVPC 260

  Fly   513 VTSTLTSKYVF 523
            ..|.||.|..|
  Rat   261 FASMLTKKLHF 271

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
StricaNP_001260718.1 CASc 311..523 CDD:294037 73/264 (28%)
Casp6NP_001258913.1 CASc 20..273 CDD:214521 72/261 (28%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR10454
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
22.010

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