DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Strica and Pea15

DIOPT Version :9

Sequence 1:NP_001260718.1 Gene:Strica / 35528 FlyBaseID:FBgn0033051 Length:527 Species:Drosophila melanogaster
Sequence 2:NP_001013249.1 Gene:Pea15 / 364052 RGDID:1306055 Length:130 Species:Rattus norvegicus


Alignment Length:115 Identity:28/115 - (24%)
Similarity:48/115 - (41%) Gaps:34/115 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly   411 ILRNRTLKDKPKLIFVQACKGDCQLGGFMTDAAQPNGSPNEILKCYSTYEGFVSF------RTED 469
            :..|.||:|..:|  ..|||.|.           |:....||    :|...:.||      ..:|
  Rat    11 LTNNITLEDLEQL--KSACKEDI-----------PSEKSEEI----TTGSAWFSFLESHNKLDKD 58

  Fly   470 GTPFIQTLCEALNRSGKTSDIDTIMMNVR-QVVKMQSKDR------QIPS 512
            ...:|:.:.|...|    .|:.|::::.| :|:|:..:|.      :|||
  Rat    59 NLSYIEHIFEISRR----PDLLTMVVDYRTRVLKISEEDELDTKLTRIPS 104

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
StricaNP_001260718.1 CASc 311..523 CDD:294037 28/115 (24%)
Pea15NP_001013249.1 DED_PEA15 2..85 CDD:260045 22/94 (23%)
Microtubule-binding. /evidence=ECO:0000255 98..107 3/7 (43%)
Microtubule-binding. /evidence=ECO:0000255 122..129
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3573
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

Return to query results.
Submit another query.