DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Strica and ced-3

DIOPT Version :10

Sequence 1:NP_610193.1 Gene:Strica / 35528 FlyBaseID:FBgn0033051 Length:527 Species:Drosophila melanogaster
Sequence 2:NP_001255708.1 Gene:ced-3 / 178272 WormBaseID:WBGene00000417 Length:503 Species:Caenorhabditis elegans


Alignment Length:435 Identity:100/435 - (22%)
Similarity:169/435 - (38%) Gaps:101/435 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly   179 ATWASFASTANSSTSSYVSPY-RQKPSMAITCTSPNIKTPKTTSSTSSSSASSITSPPK-PSSSV 241
            |.:.:..||.:...:..:.|. |...|.|:....|  .:|.:...:.:.|.:..|||.: ...||
 Worm    71 AFYDALRSTGHEGLAEVLEPLARSVDSNAVEFECP--MSPASHRRSRALSPAGYTSPTRVHRDSV 133

  Fly   242 SSISSIFKSAPKQVDKPLSSTATPKPFISLGSSGGTKPKVTAV-AQSQDAQGTIS--TSLGISKS 303
            ||:||.  ::.:.:.....|.:..:...|......:.|.|.|. :|...|..:.:  :|||.|.|
 Worm   134 SSVSSF--TSYQDIYSRARSRSRSRALHSSDRHNYSSPPVNAFPSQPSSANSSFTGCSSLGYSSS 196

  Fly   304 -SLTKNKLKPARVYIFNHER------------FDNKNEFRKGSAQDVKVL---RATFEQLK---- 348
             :.:.:|......|||:.|.            ||.|..:|..|:.....|   ...|||:.    
 Worm   197 RNRSFSKASGPTQYIFHEEDMNFVDAPTISRVFDEKTMYRNFSSPRGMCLIINNEHFEQMPTRNG 261

  Fly   349 --------------------CKVEVITDATLVTIKKTVRMLQTKDFEDKSALVLVILSHGTRHDQ 393
                                ||..:.....|:||:...:.....|     :.:|||||||  .:.
 Worm   262 TKADKDNLTNLFRCMGYTVICKDNLTGRGMLLTIRDFAKHESHGD-----SAILVILSHG--EEN 319

  Fly   394 IAAKDDDYSLDDDVVFPILRNRT---LKDKPKLIFVQACKGDCQLGGF-MTDAA----------- 443
            :....||..:....::.:|....   |.:|||::|||||:|:.:..|| :.|:.           
 Worm   320 VIIGVDDIPISTHEIYDLLNAANAPRLANKPKIVFVQACRGERRDNGFPVLDSVDGVPAFLRRGW 384

  Fly   444 ----------------------QPNGSPNEILKCYSTYEGFVSFR-TEDGTPFIQTLCEALNRSG 485
                                  :...|..:||..|:|...:||:| :..|:.|||.:||..:...
 Worm   385 DNRDGPLFNFLGCVRPQVQQVWRKKPSQADILIAYATTAQYVSWRNSARGSWFIQAVCEVFSTHA 449

  Fly   486 KTSDIDTIMMNVRQVVK--MQSKD-----RQIPSVTSTLTSKYVF 523
            |..|:..::..|.:.|.  .|:..     :|:|.:||.|..|:.|
 Worm   450 KDMDVVELLTEVNKKVACGFQTSQGSNILKQMPEMTSRLLKKFYF 494

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
StricaNP_610193.1 CASc 311..523 CDD:444667 67/295 (23%)
ced-3NP_001255708.1 CARD 2..90 CDD:128424 3/18 (17%)
CASc 235..496 CDD:214521 61/267 (23%)

Return to query results.
Submit another query.