DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Strica and LOC1280718

DIOPT Version :10

Sequence 1:NP_610193.1 Gene:Strica / 35528 FlyBaseID:FBgn0033051 Length:527 Species:Drosophila melanogaster
Sequence 2:XP_320580.5 Gene:LOC1280718 / 1280718 VectorBaseID:AGAMI1_012814 Length:292 Species:Anopheles gambiae


Alignment Length:309 Identity:79/309 - (25%)
Similarity:133/309 - (43%) Gaps:57/309 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly   250 SAPKQVD-KPLSSTATPKPFISLGSSGGTKPKVTAVAQSQDAQGTISTS----LGISKSSLTKNK 309
            :||.::| ||.||   |.|         |:|...|      .:|::.:|    ..:.:.:...:.
Mosquito     3 TAPDEIDVKPFSS---PSP---------TEPPARA------HRGSVVSSPHALAAVQEENYDTSH 49

  Fly   310 LKPARVYIFNHERFDNKNEFRKGSAQDVKVLRATFEQLKCKVEVITDATLVTIKKTVRMLQTKDF 374
            .......||||..|:: |..|:||.:|...::....||...|.|..|.....:...:..:..:|.
Mosquito    50 RNRGTALIFNHVNFES-NAKREGSNKDRDEIKKELLQLSFDVRVFNDLKKQELLAKLDEVAKEDH 113

  Fly   375 EDKSALVLVILSHGTRHDQIAAKDDDYSLDDDVVFPILRN--RTLKDKPKLIFVQACKG-----D 432
            .:....|||:::|| :...:.|.|..|.: .::..|.:.:  :||..||||.|||||:|     .
Mosquito   114 TESDCFVLVMMTHG-QDGSLYAADKQYQI-AELWEPFVGDACKTLIGKPKLFFVQACRGTKFDKG 176

  Fly   433 CQLGGFMTDAAQPNGSPN----------EILKCYSTYEGFVSFRT-EDGTPFIQTLCEALNRSGK 486
            .:|....||......|.:          ::|..||.::|..|:|. ..|:.|||:|...||:...
Mosquito   177 VKLTKIATDTVDALSSSSQRTCVIPTMADVLVMYSAFDGHYSWRNPTHGSWFIQSLSIELNQHAH 241

  Fly   487 TSDIDTIMMNVRQVV------------KMQSKDRQIPSVTSTLTSKYVF 523
            ..::..::.:|.:.|            :|..| :|:|.|.|.||....|
Mosquito   242 RKELLQLLTSVSRRVAYLYESNVPGNEQMDGK-KQMPCVVSMLTKALYF 289

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
StricaNP_610193.1 CASc 311..523 CDD:444667 64/241 (27%)
LOC1280718XP_320580.5 None

Return to query results.
Submit another query.