DRSC - DRSC Integrative Ortholog Prediction Tool

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits

Protein Alignment Strica and casp17

DIOPT Version :9

Sequence 1:	NP_001260718.1	Gene:	Strica / 35528	FlyBaseID:	FBgn0033051	Length:	527	Species:	Drosophila melanogaster
Sequence 2:	XP_017213601.1	Gene:	casp17 / 101886133	ZFINID:	ZDB-GENE-190425-2	Length:	276	Species:	Danio rerio

Alignment Length:	237	Identity:	56/237 - (23%)
Similarity:	95/237 - (40%)	Gaps:	26/237 - (10%)

- Green bases have known domain annotations that are detailed below.

  Fly   304 SLTKNKLKPARVYIFNHERF--DNKNEFRKGSAQDVKVLRATFEQLKCKVEVITDATLVTIKKTV 366
            :.|.||....|..|.:.|.|  |.....|.|:.:|.:.|.....:|...|::..|.....|.:..
Zfish     8 AFTANKRMKNRALIVSVENFYPDALLRNRPGAKKDTQRLHKILMKLGFSVDIRVDMEAGEIIEAF 72

  Fly   367 RMLQTKDFEDKSALVLVILSHGTRHDQIAAKDDDYSLDDDVVFPILRNRTLKDKPKLIFVQACKG 431
            :  |..:...|...|.:|.|||  .:.:....|..:::...::...|:..:|||.||..:|||:|
Zfish    73 K--QESEQTVKECFVGIISSHG--EEGVVFGCDGRAVNLAEIYSCFRSPIMKDKSKLFLIQACRG 133

  Fly   432 DCQLGGFMTDAAQPNGSPNEILK-----------CYSTYEGFVSFRTEDGTPFIQTLCEALNRSG 485
            ....||...:....:....:||.           .|:|..|:.:|....|:..|||||:.|...|
Zfish   134 GDLDGGVQVETDSSSSEEQDILSELLSIPIDTAVTYATSPGYAAFMHPLGSVLIQTLCDLLESDG 198

  Fly   486 KTS-DIDTIMMNVRQVV--------KMQSKDRQIPSVTSTLT 518
            ... :|..::..:...|        |:....:|:|...:..|
Zfish   199 GPDLEITKLLTRLNHQVAYNFQARGKILGGKKQMPCFVTRFT 240

Known Domains:

Indicated by green bases in alignment.

Gene	Sequence	Domain	Region	External ID	Identity
Strica	NP_001260718.1	CASc	311..523	CDD:294037	53/230 (23%)
casp17	XP_017213601.1	None

Information from Original Tools:

Tool	Simple Score	Weighted Score	Original Tool Information
Tool	Simple Score	Weighted Score	BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	1	1.100	-	-	O	PTHR10454
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
ZFIN	0	0.000	Not matched by this tool.
	2	2.010