DRSC/TRiP Functional Genomics Resources

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Protein Alignment Strica and casp3.2

DIOPT Version :9

Sequence 1:NP_001260718.1 Gene:Strica / 35528 FlyBaseID:FBgn0033051 Length:527 Species:Drosophila melanogaster
Sequence 2:NP_001120900.1 Gene:casp3.2 / 100151728 XenbaseID:XB-GENE-479960 Length:288 Species:Xenopus tropicalis


Alignment Length:234 Identity:72/234 - (30%)
Similarity:106/234 - (45%) Gaps:34/234 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly   317 IFNHERFDNKNEF--RKGSAQDVKVLRATFEQLKCKVEVITDATLVTIKKTVRMLQTKDFEDKSA 379
            |.|::.|.:....  |.|:..|.:.|..||..|..||:|..|.....|...::.:..:|...:|:
 Frog    60 IINNKNFQSSTNMGVRNGTDVDARKLHETFTGLGYKVKVCNDQKSNDIFTLLKKMSEEDHSKRSS 124

  Fly   380 LVLVILSHGTRHDQIAAKDDDYSLDDDVVFPIL-------RNRTLKDKPKLIFVQACKGDCQLGG 437
            .|..|||||  .|.:.     |.:|..:....|       |.:||..||||.|:|||:|.....|
 Frog   125 FVCAILSHG--EDGLV-----YGVDGPIQIKNLTDLFRGDRCKTLVGKPKLFFIQACRGTDLDSG 182

  Fly   438 FMTDAAQPNGS-----PNE--ILKCYSTYEGFVSFR-TEDGTPFIQTLCEALNRSGKTSDIDTIM 494
            ..||:....|.     |.|  .|..|||..|:.|:| |.:|:.|||:|||.:...|...::..|:
 Frog   183 IETDSGSELGEEIQRIPVEADFLYAYSTVPGYYSWRNTMNGSWFIQSLCEMIKLYGPHLELIQIL 247

  Fly   495 MNVRQVVKMQSKD----------RQIPSVTSTLTSKYVF 523
            ..|..:|.::.:.          :|||.|.|.||..:.|
 Frog   248 TCVNHMVALEFESCSTQQAFHAKKQIPCVVSMLTKAFYF 286

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
StricaNP_001260718.1 CASc 311..523 CDD:294037 71/232 (31%)
casp3.2NP_001120900.1 CASc 48..286 CDD:237997 71/232 (31%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR10454
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.100

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