DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Pngl and T20D4.3

DIOPT Version :9

Sequence 1:NP_610192.1 Gene:Pngl / 35527 FlyBaseID:FBgn0033050 Length:631 Species:Drosophila melanogaster
Sequence 2:NP_001309655.1 Gene:T20D4.3 / 188639 WormBaseID:WBGene00020609 Length:687 Species:Caenorhabditis elegans


Alignment Length:655 Identity:111/655 - (16%)
Similarity:204/655 - (31%) Gaps:246/655 - (37%)


- Green bases have known domain annotations that are detailed below.


  Fly    11 QIEPKTRSAGQQQQERGLKEAY------LEAVRILLVLLENILAQPENSMFRTIRQENKAIKEKL 69
            |:.|...|..::..::...|.|      ||...|..|.              .:....|::::.|
 Worm   121 QVRPYVASNIERVVDKENNETYLHPEYPLEIAHIHWVF--------------NVEIPGKSVEKIL 171

  Fly    70 LSLPGCERLLEAIGFVRAPSSNAYTLPTEVSLQQ----VKKYRDALSERRTAWLNGTVSKSPPQQ 130
            :.:||.|...:..|.:.|          :||::.    |.|..:.:...:|..|:..:.      
 Worm   172 VQVPGIEHNADDEGEIYA----------KVSIKHLDFAVNKTSNNIPMNKTMALDRNID------ 220

  Fly   131 STTSTTPLFIKPSVEYRHRIAFPRVLRTNNNFLQSLELYSDAVMQYEDNLLLATGRTLIPVEELT 195
              |.|..:.|...:::         |:||:.        ..:.:.:...:...||:...|.....
 Worm   221 --TVTMNIIIHKPIKF---------LKTNSK--------ESSGVTFSIKVYWKTGKYPTPPVSSN 266

  Fly   196 EMASEKLIDIQDQIASGERQEKEPCVRDLLLVELVNWFNTQFFQWVNNIPCRVCGSEESRLRRTE 260
            ...|:|                               |:|.            ..|.::.|||:|
 Worm   267 TTTSKK-------------------------------FSTS------------SRSNDTELRRSE 288

  Fly   261 REGDIRVEVTVCCGQESKFYRYNDISQLLVSRKGRCGEYANCFTFLCRALDYDARIVHSHFDHVW 325
                          :..:.|.|       :..:...|:....||       ||          :.
 Worm   289 --------------ELKEQYGY-------IQLQPESGQNYVKFT-------YD----------II 315

  Fly   326 TEVYSEAQMRWLHVDPSE-----NVIDSPLMYQHGWKRHIDYILAYSRDDIQDVTWRYT-----N 380
            ..:||........|:|.:     .|:|     :...:.:|.....|.|.::.   |::.     .
 Worm   316 NNIYSHDNEDGSPVNPKQVFNIKRVVD-----EENNEAYIGQEALYRRSNMY---WQFDLRNTGK 372

  Fly   381 DHQKILHLRKLCGEKEMVQTLDAIRAKRRQ--NCT---ADRKLFLSQRNMYEVIGLTLER--KPT 438
            :.:|:  :.|:.|..|:.|...::......  |||   .:..|.:.|......|.:||.|  |..
 Worm   373 NVEKV--VVKMTGMDEITQYAGSVECCLNYLINCTDIPINESLTIEQYVGKLYIEITLHRPIKVL 435

  Fly   439 ENELKGRSS-GSLS----WRQSRGEHTFTNIFVFNLSAT--------ELQKRQLNVRYSCATDTY 490
            :.::|||.| .|.|    |:........|...|..::.|        ..:..:|:::|...|.|:
 Worm   436 KTDVKGRKSVESFSIEVYWKDEPSYPLTTTTAVTEMNTTPKTIATSPTSKDPKLHLQYDNTTTTF 500

  Fly   491 E--------RYAKEGEHITILDSYKTWQ---KAQFSSKNIFRKVERDWKMAYLARLEDTDCGE-- 542
            .        |...|..::      |.|.   :..:|..:......:.:.:|.:.|..||..||  
 Worm   501 TQEDKLIELRPTSEANYV------KFWYNIVRNTYSQTHTNGSPVKPYLVANIERTIDTRLGEVF 559

  Fly   543 ------------IAWTFDFSKTNLKVKSYNLVFETKTFGDGKISVTVDATDGSASVENATGFKIV 595
                        |||.|     |:.||             ||:            ||     ||:
 Worm   560 LHKKERSEHWASIAWFF-----NIDVK-------------GKL------------VE-----KII 589

  Fly   596 AKLTG 600
            .:::|
 Worm   590 IRMSG 594

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PnglNP_610192.1 PUB 30..107 CDD:286494 16/86 (19%)
CitX 98..>185 CDD:294885 12/90 (13%)
Transglut_core <278..341 CDD:280085 10/62 (16%)
YebA <282..378 CDD:224224 16/100 (16%)
Rad4 <325..>383 CDD:281786 10/67 (15%)
PAW 444..630 CDD:282564 38/195 (19%)
T20D4.3NP_001309655.1 PAW 95..182 CDD:214745 14/74 (19%)
PAW 302..389 CDD:214745 19/113 (17%)
PAW 512..599 CDD:214745 24/124 (19%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C160157788
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.930

Return to query results.
Submit another query.