DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Act42A and ARP8

DIOPT Version :9

Sequence 1:NP_523625.1 Gene:Act42A / 35526 FlyBaseID:FBgn0000043 Length:376 Species:Drosophila melanogaster
Sequence 2:NP_568836.2 Gene:ARP8 / 835717 AraportID:AT5G56180 Length:471 Species:Arabidopsis thaliana


Alignment Length:373 Identity:101/373 - (27%)
Similarity:175/373 - (46%) Gaps:61/373 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 ALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPI 72
            ::::|.|||.||.|::...:|.       ||   ....:..|..:|.:....|.           
plant   135 SIIIDGGSGYCKFGWSKYASPS-------GR---SATFLEFGNIESPIYARLQQ----------- 178

  Fly    73 EHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPL-------NPKANREKMTQIMFET--- 127
                          :..|.:..::|.|...|:::: .||       :.||:|.::...:|..   
plant   179 --------------FFATIFTRMQVKPSMQPIVVS-LPLCHFDDTESAKASRRQLKTAIFNVLFD 228

  Fly   128 FNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPH-AILRLDLAGRDLTDYLM 191
            .|.||:....||||:|||:.||:|||::.|..|...:||..|..:.. .:..:......||.:|.
plant   229 MNVPAVCAVNQAVLALYAARRTSGIVVNIGFQVITILPILHGKVMRQVGVEVIGFGALKLTGFLK 293

  Fly   192 KILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITIGNERF 256
            :.:.|...||.:.   ..||.:||||||||||::.|:     |...:.|.|:......|:..|||
plant   294 EKMQENNISFQSL---YTVRTLKEKLCYVALDYKAEL-----SKDTQASVEVSGEGWFTLSKERF 350

  Fly   257 RCPESLFQPSFLGMEACGIHETTYNSIMKCD-VDIRKD--LYANTVLSGGTTMYPGIADRMQKEI 318
            :..|.||||...||.|..:|:.....:..|| ..:..|  .:...||:||:...||:::|:::|:
plant   351 QTGEILFQPRLAGMRAMSLHQAVSLCMDHCDAAGLTGDDSWFKTVVLTGGSACLPGLSERLEREL 415

  Fly   319 TALAPSTMK--IKIVAPPERKYSVWIGGSILASLSTFQQMW-ISKQEY 363
            ....||::.  |:::.||....:.|.|..::::||.|...| |:::::
plant   416 QDHLPSSISNGIRVIPPPYGVDTSWHGAKLISNLSIFPGPWCITRKQF 463

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Act42ANP_523625.1 PTZ00281 1..376 CDD:173506 101/373 (27%)
ARP8NP_568836.2 F-box-like 43..83 CDD:289689
ACTIN 136..462 CDD:214592 101/369 (27%)
NBD_sugar-kinase_HSP70_actin <182..463 CDD:302596 88/289 (30%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5277
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11937
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
43.910

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