DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Act42A and arp2

DIOPT Version :9

Sequence 1:NP_523625.1 Gene:Act42A / 35526 FlyBaseID:FBgn0000043 Length:376 Species:Drosophila melanogaster
Sequence 2:NP_001342919.1 Gene:arp2 / 5802965 PomBaseID:SPAC11H11.06 Length:390 Species:Schizosaccharomyces pombe


Alignment Length:377 Identity:178/377 - (47%)
Similarity:258/377 - (68%) Gaps:14/377 - (3%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP--RHQGVMVGMGQKDSYVGDEAQSKRGILT 67
            |.|.:|:|||:|..|.|:|.|:.||..||||||||  |.:.....:..||..|||||::.|.:|.
pombe     2 ESAPIVLDNGTGFVKVGYAKDNFPRFQFPSIVGRPILRAEEKTGNVQIKDVMVGDEAEAVRSLLQ 66

  Fly    68 LKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPA 132
            :|||:|:||:.::::|.::|.:||:.:|::.|....:||||.|:||.||||||.:.|||.:....
pombe    67 VKYPMENGIIRDFEEMNQLWDYTFFEKLKIDPRGRKILLTEPPMNPVANREKMCETMFERYGFGG 131

  Fly   133 MYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTER 197
            :||||||||||||.|.::|:|:||||||:|.||:||...|.|.:.|||:||||.|.||:.:|..:
pombe   132 VYVAIQAVLSLYAQGLSSGVVVDSGDGVTHIVPVYESVVLNHLVGRLDVAGRDATRYLISLLLRK 196

  Fly   198 GYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITIGNERFRCPESL 262
            ||:|..||:.|.||::|||||||:.|.|.:...:..::.|.::|.||||:||.:|:||:.|||.|
pombe   197 GYAFNRTADFETVREMKEKLCYVSYDLELDHKLSEETTVLMRNYTLPDGRVIKVGSERYECPECL 261

  Fly   263 FQPSFLGMEACGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITAL------ 321
            |||..:|.|..|:.|..:::|...||||||.||...|||||::||.|:..|::|||..|      
pombe   262 FQPHLVGSEQPGLSEFIFDTIQAADVDIRKYLYRAIVLSGGSSMYAGLPSRLEKEIKQLWFERVL 326

  Fly   322 --APSTM---KIKIVAPPERKYSVWIGGSILAS-LSTFQQMWISKQEYDESG 367
              .|:.:   |:||...|.|:::|:|||::||. ::....||:||.|::|.|
pombe   327 HGDPARLPNFKVKIEDAPRRRHAVFIGGAVLADIMAQNDHMWVSKAEWEEYG 378

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Act42ANP_523625.1 PTZ00281 1..376 CDD:173506 178/377 (47%)
arp2NP_001342919.1 ACTIN 4..382 CDD:214592 177/375 (47%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5277
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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