DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment mle and PRP43

DIOPT Version :9

Sequence 1:NP_476641.1 Gene:mle / 35523 FlyBaseID:FBgn0002774 Length:1293 Species:Drosophila melanogaster
Sequence 2:NP_011395.1 Gene:PRP43 / 852757 SGDID:S000003088 Length:767 Species:Saccharomyces cerevisiae


Alignment Length:799 Identity:218/799 - (27%)
Similarity:367/799 - (45%) Gaps:120/799 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly   344 DEGELATTSIDDLSMDYERSLRDRRQNDNEYRQF-------LEFREKLPIAAMRSEILTAINDNP 401
            |.||.........|.:..:.|.|.:.|....|:|       |:.|.:||:.|.|.|.|....:|.
Yeast    46 DAGEFKGLQRHHTSAEEAQKLEDGKINPFTGREFTPKYVDILKIRRELPVHAQRDEFLKLYQNNQ 110

  Fly   402 VVIIRGNTGCGKTTQIAQYILDDYICSGQGGYANIYVTQPRRISAISVAERVARERCEQLGDTVG 466
            :::..|.||.||||||.|::|.|.:...:.  ..:..|||||::|:|||:|||.|...:||:.||
Yeast   111 IMVFVGETGSGKTTQIPQFVLFDEMPHLEN--TQVACTQPRRVAAMSVAQRVAEEMDVKLGEEVG 173

  Fly   467 YSVRFESVFPRPYGAIL-FCTVGVLLRKL--EAGLRGVSHIIVDEIHERDVNSDFLLVILRDMVD 528
            ||:|||:.....  .|| :.|.|:|||:.  :..|...|.||:||.|||.:.:|.|:.:|:.:|.
Yeast   174 YSIRFENKTSNK--TILKYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVK 236

  Fly   529 TYPDLHVILMSATIDTTKFSKYFGICPVLEVPGRAFPVQQFFLEDIIQMTDFVPSAESRRKRKEV 593
            ..|||.:|:||||:|..||.:||...|:|.||||.:||:.::..:.  ..|::.||         
Yeast   237 RRPDLKIIIMSATLDAEKFQRYFNDAPLLAVPGRTYPVELYYTPEF--QRDYLDSA--------- 290

  Fly   594 EDEEQLLSEDKDEAEINYNKVCEDKYSQKTRNAMAMLSESDVSFELLEALLMHIKSKNIPGAILV 658
                                                         :...|.:|...:  .|.||:
Yeast   291 ---------------------------------------------IRTVLQIHATEE--AGDILL 308

  Fly   659 FLPGWNLIFALMKFLQNTNIFGD-------TSQYQILPCHSQIPRDEQRKVFEPVPEGVT----- 711
            ||.|.:   .:...::..::.||       .....:.|.:..:|..:|:::|||.||...     
Yeast   309 FLTGED---EIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGR 370

  Fly   712 KIILSTNIAETSITIDDIVFVIDICKARMKLFTSHNNLTSYATVWASKTNLEQRKGRAGRVRPGF 776
            |:::||||||||:|||.||:|:|...::.|::.....:.|......||.:.:||.|||||.|||.
Yeast   371 KVVISTNIAETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRPGK 435

  Fly   777 CFTLCSRARFQ-ALEDNLTPEMFRTPLHEMALTIKLLRLGSIHHFLSKALEPPPVDAVIEAEVLL 840
            ||.|.:...|| .|.:...||:.|:.|....|.:|.|.:..:.||  ..::||..:.::.|...|
Yeast   436 CFRLYTEEAFQKELIEQSYPEILRSNLSSTVLELKKLGIDDLVHF--DFMDPPAPETMMRALEEL 498

  Fly   841 REMRCLDANDELTPLGRLLARLPIEPRLGKMMVLGAVFGCA-DLMAIMASYSSTFSEVFSLDIGQ 904
            ..:.|||....|||||||.::.|::|.|..|::....|.|: :::.|:|..|  ...||......
Yeast   499 NYLACLDDEGNLTPLGRLASQFPLDPMLAVMLIGSFEFQCSQEILTIVAMLS--VPNVFIRPTKD 561

  Fly   905 RRLANHQKALSGTKCSDHVAMIVASQMWRREK--QRGEHMEARFCDWKGLQMSTMNVIWDAKQQL 967
            ::.|:..|.:......||:.::.....::.::  :.|.|   ::|....|...:::...:.:.||
Yeast   562 KKRADDAKNIFAHPDGDHITLLNVYHAFKSDEAYEYGIH---KWCRDHYLNYRSLSAADNIRSQL 623

  Fly   968 LDLLQQAGFPEECMISHEVD-ERIDGDDP-VLDVSLALLCLGLYPNICVHKEKRK--VLTTESKA 1028
                      |..|..:.:: ...|.:.| ..|.....|..|.:..:...:...|  :...:::.
Yeast   624 ----------ERLMNRYNLELNTTDYESPKYFDNIRKALASGFFMQVAKKRSGAKGYITVKDNQD 678

  Fly  1029 ALLHKTSVNCSNLAVTFPYPFFVFGEKIRTRAVSCKQLSMVSPLQVILFGSRKIDLAANNIVRVD 1093
            .|:|.::|      :.....:.::.|.:.|.....:.::.|.|..:|.......||  :|..:.|
Yeast   679 VLIHPSTV------LGHDAEWVIYNEFVLTSKNYIRTVTSVRPEWLIEIAPAYYDL--SNFQKGD 735

  Fly  1094 NWLNFDIEPELAAKIGALK 1112
            ..|:.:...|...::..||
Yeast   736 VKLSLERIKEKVDRLNELK 754

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
mleNP_476641.1 DSRM 4..68 CDD:214634
DSRM 170..240 CDD:214634
DEXDc 393..569 CDD:214692 77/178 (43%)
DEXDc 402..542 CDD:238005 61/142 (43%)
ATP-synt_B <584..644 CDD:304375 1/59 (2%)
Helicase_C 643..772 CDD:278689 44/140 (31%)
HA2 842..926 CDD:214852 25/84 (30%)
OB_NTP_bind 974..1078 CDD:285018 16/107 (15%)
PRP43NP_011395.1 HrpA 55..753 CDD:224557 213/787 (27%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG1643
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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