DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG43366 and Serpina3n

DIOPT Version :10

Sequence 1:NP_610188.2 Gene:CG43366 / 35519 FlyBaseID:FBgn0263109 Length:2140 Species:Drosophila melanogaster
Sequence 2:NP_113719.3 Gene:Serpina3n / 24795 RGDID:3747 Length:418 Species:Rattus norvegicus


Alignment Length:489 Identity:106/489 - (21%)
Similarity:194/489 - (39%) Gaps:142/489 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly  1678 DLQSFARLCNELAFSYWRAITSEKISSARSLVISPFALTSMLSMVFLGARGSTSGEMNEILKLDD 1742
            |..:.|.:..:.|||.::.:...  :..:::|.||.::::.|::|.|||:|::..|:.|.||.: 
  Rat    43 DSLTLASINTDFAFSLYKKLALR--NPDKNVVFSPLSISAALAVVSLGAKGNSMEEILEGLKFN- 104

  Fly  1743 MVTFNP----HLIFKNITNSVEQASDS-DIAT--AAFVREIFSDRANGKILPFFKEKTQQLYAGH 1800
             :|..|    |..|.::...:.|..|. .|:|  |.|:.:..      ::|..|:||.:.||...
  Rat   105 -LTETPETEIHRGFGHLLQRLSQPRDEIQISTGNALFIEKRL------QVLAEFQEKAKALYQAE 162

  Fly  1801 VEEVNFHVVNDIVRRRTNLLVKRHTMGKVLEYL-----RTNSVWVN------------GPLATIS 1848
            ....:|....: .::..|..|.:.|.||:...:     :|:.|.||            .|..|  
  Rat   163 AFTADFQQSRE-AKKLINDYVSKQTQGKIQGLITNLAKKTSMVLVNYIYFKGKWKVPFDPRDT-- 224

  Fly  1849 ANLFQTDCSHGSTTDRDGEMFFQVHPTVRQRRLVPIPAVLYRSGFLAGY--EPSLDATVVSFGRV 1911
               ||::...|                  :||.|.:| ::........|  :..|:.|||.. :.
  Rat   225 ---FQSEFYSG------------------KRRPVKVP-MMKLEDLTTPYVRDEELNCTVVEL-KY 266

  Fly  1912 QNTVSTVYVMPGHQSSISPMDNLDRLERSLVETAFSDKQAWRRLLTSLMDRPGM--EVQLPRFSH 1974
            ....|.::::|       ....:.::|.||      ..:..||...||  ||.|  |:.||:||.
  Rat   267 TGNASALFILP-------DQGKMQQVEASL------QPETLRRWKDSL--RPSMIDELYLPKFSI 316

  Fly  1975 RSFVNASLGLQKMGLRGLFKSDFADLRGLTGAGNRDIFLSDMIQINTFSTCGEEKISEHHHVEMY 2039
            .:..|....|.::|::.:|.:. |||.|:|  |::|:.:|.::.                     
  Rat   317 SADYNLEDVLPELGIKEVFSTQ-ADLSGIT--GDKDLMVSQVVH--------------------- 357

  Fly  2040 PAPPLRKRNKDVDATDDDAFDSSERVVDFGSLVQESALGRGFYDDLLDPKYLELPLPLRPRQARV 2104
                                   :.|:|......|:|...|.       |::       |..|::
  Rat   358 -----------------------KAVLDVAETGTEAAAATGV-------KFV-------PMSAKL 385

  Fly  2105 PDAPRLRFDKPFLYFVRHNPTGMILFMGR-FNPR 2137
             |...:.||:|||..:....|.:..|:.: |||:
  Rat   386 -DPLIIAFDRPFLMIISDTETAIAPFLAKIFNPK 418

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG43366NP_610188.2 MDN1 956..>1505 CDD:444083
Serpin 1687..2136 CDD:459662 102/477 (21%)
Serpina3nNP_113719.3 serpinA3_A1AC 37..418 CDD:381019 105/487 (22%)
RCL 367..394 8/41 (20%)
Blue background indicates that the domain is not in the aligned region.

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