DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG43366 and srp-3

DIOPT Version :9

Sequence 1:NP_610188.2 Gene:CG43366 / 35519 FlyBaseID:FBgn0263109 Length:2140 Species:Drosophila melanogaster
Sequence 2:NP_503528.2 Gene:srp-3 / 178672 WormBaseID:WBGene00005644 Length:362 Species:Caenorhabditis elegans


Alignment Length:372 Identity:84/372 - (22%)
Similarity:142/372 - (38%) Gaps:94/372 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly  1707 SLVISPFALTSMLSMVFLGARGSTSGEMNEIL---KLDDMVTFNPHLIF-----KNITNSVEQAS 1763
            |||.||.::..:||:|..|.|||:..::...|   ..|:.:.  .|..|     ||.|..||.. 
 Worm    23 SLVFSPLSIALVLSLVHTGVRGSSRDQIRNTLLSGATDEQLV--EHFSFVSKEVKNGTKGVEVY- 84

  Fly  1764 DSDIATAAFVREIFSDRANGKILPFFKEKTQQLYAGHVEEVNF------HVVNDIVRRRTNLLVK 1822
               :|...::::.|:      :.|.|.....:.|....:.::.      ..:|..|...||    
 Worm    85 ---LANKVYLKKGFT------VNPTFLSTALKNYGADAKSLDLTTPAAVQEINSFVNTATN---- 136

  Fly  1823 RHTMGKVLEYLRTNSVWVNGPLATISANLFQTDCSHGSTTDR-DG----EMFFQVHPTVRQRRLV 1882
                ||:......:|: .:.....|::..|:.|..     |: ||    |..|.:|...:::   
 Worm   137 ----GKIKNIATQDSI-KDAIALLINSIYFKADWD-----DKFDGMSVSEQDFTLHTGEKKK--- 188

  Fly  1883 PIPAVLYRSGFLAGYEPSLDATVVSFGRVQNTVSTVYVMPGHQSSISPMDNLDRLERSLVETAFS 1947
                :.:...|:.....|.|       .|.:.:...|....:|.|:.    |.:|..||      
 Worm   189 ----IKFMKEFMNDRSFSSD-------DVFDVLHVAYSDQRYQFSVF----LPKLRNSL------ 232

  Fly  1948 DKQAWRRL-------LTSLMDRPGMEVQLPRFSHRSFVNASLGLQKMGLRGLFKSDFADLRGLTG 2005
             |:|.::|       |.....|..|..|||:|:....:|....||.:|:..:| ||.|||.||. 
 Worm   233 -KEALKKLNEKRFNDLLKTKKRTFMNTQLPKFTIEKDLNLKSHLQTLGITDIF-SDSADLSGLA- 294

  Fly  2006 AGNRDIFLSD-----MIQINTFSTCGEEKISEHHHVEMYPAPPLRKR 2047
               .::.:|:     :|::|...|....       |.|..|.|:..|
 Worm   295 ---ENLKISEGVHKAIIEVNEEGTTAAA-------VTMMKAVPMSAR 331

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG43366NP_610188.2 SERPIN 1687..2136 CDD:294093 84/372 (23%)
srp-3NP_503528.2 serpinL_nematode 5..360 CDD:381047 84/372 (23%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11461
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.100

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