DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG43366 and srp-1

DIOPT Version :9

Sequence 1:NP_610188.2 Gene:CG43366 / 35519 FlyBaseID:FBgn0263109 Length:2140 Species:Drosophila melanogaster
Sequence 2:NP_503315.1 Gene:srp-1 / 178585 WormBaseID:WBGene00005642 Length:366 Species:Caenorhabditis elegans


Alignment Length:471 Identity:94/471 - (19%)
Similarity:160/471 - (33%) Gaps:161/471 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly  1697 ITSEKISSARSLVISPFALTSMLSMVFLGARGSTSGEM-NEILKLDDMVTFNPHLIFKN-ITNSV 1759
            :||::::..   |.||.::...|::|.|||:|.|..:: |.::.......|..|..|.| :.||.
 Worm    23 LTSDQLTPC---VFSPVSILLSLALVHLGAKGHTRHDIRNSVVNGSTDEQFIEHFSFINKLLNSS 84

  Fly  1760 EQASDSDIATAAFV------REIFSDRANGKILPFFKEKTQQLYAGHVEEVNFHVVNDIVRRRTN 1818
            ....::.||...||      |:.|:|            :.::.|......::|....: ..:..|
 Worm    85 VNDVETLIANRLFVSPEQAIRKAFTD------------ELREHYNAETATIDFKKSQE-AAKIMN 136

  Fly  1819 LLVKRHTMGKVLEYLRTNSVW-VNGPLATISANLFQTDCSHGSTTDRDGEMFFQVHPTVRQRRLV 1882
            ..:...|.||:.:.::.:::. |:..|  |:|..||.|...  ......|..|.:..|  :.|||
 Worm   137 QFISESTKGKIPDMIKPDNLKDVDAIL--INAIFFQGDWRR--KFGEPAESNFSISAT--ENRLV 195

  Fly  1883 PIPAVLYRSGFLAGYEPSLDATVVSFGRVQNTVSTVYVMPGHQSSISPMDNLDRLERSLVETAFS 1947
            |:                          ::.|....|             |.|. |..::...|.
 Worm   196 PM--------------------------LRETRDYFY-------------NKDD-EWQVIGIPFK 220

  Fly  1948 DKQAW-------RRL-------------LTSLMDRPGME---VQLPRFSHRSFVNASLGLQKMGL 1989
            ||.||       ||.             ..:|::....|   :..|:|.....:|....|.|.||
 Worm   221 DKSAWFAIFLPTRRFALAENLKSLNAAKFHNLINNVYQEYIFLTFPKFKMDYKINLKTALAKFGL 285

  Fly  1990 RGLFKSDFADLRGLTGAGNRDIFLSDMIQINTFSTCGEEKISEHHHVEMYPAPPLRKRNKDVDAT 2054
            ..|| ::.|||.|: |.|         :|:          .|..|...:           :||..
 Worm   286 AELF-TEQADLSGI-GPG---------LQL----------ASATHQALI-----------EVDQV 318

  Fly  2055 DDDAFDSSERVVDFGSLVQESALGRGFYDDLLDPKYLELPLPLRPRQARVPDAPRLRFDKPFLY- 2118
            ...|..::|..:.|.|...:..|                               .:|.|.|||: 
 Worm   319 GTRAAAATEAKIFFTSASSDEPL-------------------------------HIRVDHPFLFA 352

  Fly  2119 FVRHNPTGMILFMGRF 2134
            .::.|..   ||:|.:
 Worm   353 IIKDNSP---LFLGTY 365

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG43366NP_610188.2 SERPIN 1687..2136 CDD:294093 94/471 (20%)
srp-1NP_503315.1 serpinL_nematode 11..365 CDD:381047 94/469 (20%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11461
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.100

Return to query results.
Submit another query.