DRSC/TRiP Functional Genomics Resources

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Protein Alignment Or42b and Or56a

DIOPT Version :10

Sequence 1:NP_523624.2 Gene:Or42b / 35516 FlyBaseID:FBgn0033043 Length:399 Species:Drosophila melanogaster
Sequence 2:NP_523796.2 Gene:Or56a / 37269 FlyBaseID:FBgn0034473 Length:419 Species:Drosophila melanogaster


Alignment Length:446 Identity:82/446 - (18%)
Similarity:163/446 - (36%) Gaps:130/446 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly    26 RAMKFIGWLPPKQ------GVLRYVYLTWTLMTFVW--CTTYLPLGFLG---------SYMTQIK 73
            |..::.|::..|.      .::|...||    ..:|  |...|...|.|         ||.|.::
  Fly    24 RYFQWYGYVASKDQNRPLLSLIRCTILT----ASIWLSCALMLARVFRGYENLNDGATSYATAVQ 84

  Fly    74 SFSPGEFLTSLQVCINAYGSSVKV----AITYSMLWRLIKAKNILDQLDLRCTAMEEREKIHLVV 134
            .|:     .|:.: .|||....||    .:.:|.:      :|::.:.|.|        ::.|:|
  Fly    85 YFA-----VSIAM-FNAYVQRDKVISLLRVAHSDI------QNLMHEADNR--------EMELLV 129

  Fly   135 ARSNHAFLIFTFVY--------CGYAGSTYLSSVLSGRPPWQLYN------------------PF 173
            |...:...|...::        ..|:...|.|..|    |..::|                  ||
  Fly   130 ATQAYTRTITLLIWIPSVIAGLMAYSDCIYRSLFL----PKSVFNVPAVRRGEEHPILLFQLFPF 190

  Fly   174 IDWHD----GTLKLWVASTLEYMVMSGAVLQDQLSDSYPLIYTLI------LRAHLDMLRERIR- 227
            .:..|    |.|..|.|..|....:             ||.:|.|      :...|.:|.:|:. 
  Fly   191 GELCDNFVVGYLGPWYALGLGITAI-------------PLWHTFITCLMKYVNLKLQILNKRVEE 242

  Fly   228 -------------RLRSDE-NLSEAESYEELVKCVMDHKLILRYCAIIKPVIQGTIFTQFLLIGL 278
                         ||.:.| ...:.:.::|.||   :...|.::...::.:|...:...|::   
  Fly   243 MDITRLNSKLVIGRLTASELTFWQMQLFKEFVK---EQLRIRKFVQELQYLICVPVMADFII--- 301

  Fly   279 VLGFTLINVFFFSDIWTGIAS-----FMFVITILLQTFPFCY--TCNLIMEDCESLTHAIFQSNW 336
               |:::..|.|..:..|:.|     |||:...::....:.|  ...||:|..:.|:.|.|...|
  Fly   302 ---FSVLICFLFFALTVGVPSKMDYFFMFIYLFVMAGILWIYHWHATLIVECHDELSLAYFSCGW 363

  Fly   337 VDASRRYKTTLLYFLQNVQQPIVFIAGGIFQISMSSNISVAKFAFSVITITKQMNI 392
            .:.....:..|::.:.:.|:|:...| .:..:::.:.|.:.:.|:|...:.:..::
  Fly   364 YNFEMPLQKMLVFMMMHAQRPMKMRA-LLVDLNLRTFIDIGRGAYSYFNLLRSSHL 418

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Or42bNP_523624.2 7tm_6 76..381 CDD:251636 65/366 (18%)
Or56aNP_523796.2 7tm_6 126..407 CDD:251636 55/307 (18%)

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