DRSC/TRiP Functional Genomics Resources

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Protein Alignment ap and lhx9

DIOPT Version :10

Sequence 1:NP_724428.1 Gene:ap / 35509 FlyBaseID:FBgn0267978 Length:469 Species:Drosophila melanogaster
Sequence 2:NP_001032320.2 Gene:lhx9 / 550405 ZFINID:ZDB-GENE-050417-210 Length:396 Species:Danio rerio


Alignment Length:342 Identity:153/342 - (44%)
Similarity:206/342 - (60%) Gaps:52/342 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly   129 PPSSPESTSDSKITRNLDDCSGCGRQIQDRFYLSAVEKRWHASCLQCYACRQPLERESSCYSRDG 193
            |..|||..:         .|:|||.:|.||:||.||:|:||..||:|..|:..||.|.:|:::||
Zfish    61 PSMSPEKPA---------LCAGCGGKISDRYYLLAVDKQWHLRCLKCCECKLALESELTCFAKDG 116

  Fly   194 NIYCKNDYYSFFGTRRCSRCLASISSNELVMRARNLVFHVNCFCCTVCHTPLTKGDQYGIIDALI 258
            :||||.|||..|..:||:||...||::|:|||||:.|:|::||.||.|:..||.||.:|:.|.|:
Zfish   117 SIYCKEDYYRRFSVQRCARCHLGISASEMVMRARDSVYHLSCFTCTTCNKTLTTGDHFGMKDNLV 181

  Fly   259 YCRTHYSIAREGDTASSSMSATYPYSAQFGSPHNDSSSPHSDPSRSIVPTGIFVPASHVINGLPQ 323
            |||.|:....:|:   ......|...|..|.                   |:.:|   ..||  .
Zfish   182 YCRVHFETLIQGE---YHPQLNYAELAAKGG-------------------GLALP---YFNG--T 219

  Fly   324 PARQKGRPRKRKPK----DIEAFTANIDLN-TEYVDFGRGSHLSSSSRTKRMRTSFKHHQLRTMK 383
            ...|||||||||..    ||.::::..:.| .:::|..:..: ..|.:|||||||||||||||||
Zfish   220 GTVQKGRPRKRKSPAMGIDIGSYSSGCNENDADHLDRDQQPY-PPSQKTKRMRTSFKHHQLRTMK 283

  Fly   384 SYFAINHNPDAKDLKQLSQKTGLPKRVLQVWFQNARAKWRRMMMKQDGSGLLEKGEGALDLDSIS 448
            |||||||||||||||||:|||||.||||||||||||||:||.:::|:..| ::|.:|.      |
Zfish   284 SYFAINHNPDAKDLKQLAQKTGLTKRVLQVWFQNARAKFRRNVLRQENGG-VDKADGT------S 341

  Fly   449 VHSPTSFILGGPNSTPP 465
            :..|:|   .....|||
Zfish   342 LPPPSS---DSGALTPP 355

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
apNP_724428.1 LIM1_Lhx2_Lhx9 148..201 CDD:188755 28/52 (54%)
LIM2_Lhx2_Lhx9 206..264 CDD:188763 29/57 (51%)
Homeodomain 368..424 CDD:459649 52/55 (95%)
lhx9NP_001032320.2 LIM1_Lhx2 61..124 CDD:188853 32/71 (45%)
LIM2_Lhx2_Lhx9 129..187 CDD:188763 29/57 (51%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 248..272 7/24 (29%)
Homeodomain 268..324 CDD:459649 52/55 (95%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 328..365 10/38 (26%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 377..396
Blue background indicates that the domain is not in the aligned region.

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