DRSC/TRiP Functional Genomics Resources

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Protein Alignment ap and zfh2

DIOPT Version :10

Sequence 1:NP_724428.1 Gene:ap / 35509 FlyBaseID:FBgn0267978 Length:469 Species:Drosophila melanogaster
Sequence 2:NP_524623.2 Gene:zfh2 / 43795 FlyBaseID:FBgn0004607 Length:3005 Species:Drosophila melanogaster


Alignment Length:531 Identity:119/531 - (22%)
Similarity:186/531 - (35%) Gaps:148/531 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly    31 PPVAHQGSNQCGSA----AGANNNHPLFRACSSSSCPDICDHSTK-----PFGNAYGT------- 79
            ||:.. |:|..|:|    :..||:.....|.|:|...|  .|.|.     |..:...|       
  Fly  1722 PPLVF-GANAAGNAVSGPSALNNSITTSTATSASGLGD--THLTSGVSSIPVDSGKATAVPPQTQ 1783

  Fly    80 -------ESFRSYETADRATFEDSAAK-----FSISRSRTD--CTEVSDETTSGISF-------- 122
                   :...|.:...|....|...|     |.|:.|.::  ..|:|.:....:..        
  Fly  1784 LNANANSQQLASNQKRARTRITDDQLKILRAHFDINNSPSEESIMEMSQKANLPMKVVKHWFRNT 1848

  Fly   123 --------KTEPF---GPPSSP------ESTSDSKITRNLDDCSGC--GRQIQDRFYL------- 161
                    |..|:   .|||:.      |.|..:|:|...|.||..  |........|       
  Fly  1849 LFKERQRNKDSPYNFNNPPSTTLNLEEYERTGQAKVTPLNDTCSVAVTGPMTSSTISLPPSGNIN 1913

  Fly   162 -----SAVEK-----RWHASCLQCYAC----RQPLERESSCYSRDGNIYCKNDYYS---FFGTRR 209
                 :|..|     :.:||....::.    ..||.|..|..| .|||   :||..   |||   
  Fly  1914 LSSKENATSKVLAAGKANASGPVTFSATVPVSTPLSRPESTNS-SGNI---SDYIGNNIFFG--- 1971

  Fly   210 CSRCLASISSNELVM-----------------RARNLVFHVNCFCCTVCHTPLT-KGDQYGIIDA 256
                  .:.|.|.::                 .|.:..:.      |..|:..: ...|..::|.
  Fly  1972 ------QLGSKEQILPYSLDGQIKSEPQDDMIGATDFAYQ------TKQHSSFSFLKQQQDLVDP 2024

  Fly   257 LIYCRTHYSIAREGDT-------ASSSMSATYPYSAQFGSPHNDSSSPHSD-----PSRSIVPTG 309
            ...|.|:    :..||       |.||:::......|.......|.|..||     ||.:....|
  Fly  2025 PEQCLTN----QNADTAQDQSLLAGSSLASNCQSQQQINIFETKSESGSSDVLSRPPSPNSGAAG 2085

  Fly   310 -IFVPASHVIN-GLPQPARQKGRPRKRK------PKDIEAFTANIDLNTEYVDFGRGSHLSSSSR 366
             ::...:.::| .|.......|.|:|.:      .|::.....:..::|::......|..||||.
  Fly  2086 NVYGSMNDLLNQQLENMGSNMGPPKKMQIVGKTFEKNVAPMVTSGSVSTQFESNSSNSSSSSSST 2150

  Fly   367 T--KRM-RTSFKHHQLRTMKSYFAINHNPDAKDLKQLSQKTGLPKRVLQVWFQNARAKWRRMMMK 428
            :  ||. ||.|..:|::.::.:|..|..|...||:.||:...|..||:.|||||||.|.|::...
  Fly  2151 SGGKRANRTRFTDYQIKVLQEFFENNSYPKDSDLEYLSKLLLLSPRVIVVWFQNARQKQRKIYEN 2215

  Fly   429 QDGSGLLEKGE 439
            |..:.|.|..|
  Fly  2216 QPNNTLFENEE 2226

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
apNP_724428.1 LIM1_Lhx2_Lhx9 148..201 CDD:188755 16/75 (21%)
LIM2_Lhx2_Lhx9 206..264 CDD:188763 10/75 (13%)
Homeodomain 368..424 CDD:459649 24/56 (43%)
zfh2NP_524623.2 C2H2 Zn finger 561..581 CDD:275368
C2H2 Zn finger 616..633 CDD:275368
C2H2 Zn finger 1515..1542 CDD:275371
C2H2 Zn finger 1543..1564 CDD:275371
Homeodomain 1798..1857 CDD:459649 8/58 (14%)
Homeodomain 2155..2211 CDD:459649 23/55 (42%)
Homeodomain 2761..2817 CDD:459649
Blue background indicates that the domain is not in the aligned region.

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