DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment ap and LHX8

DIOPT Version :10

Sequence 1:NP_724428.1 Gene:ap / 35509 FlyBaseID:FBgn0267978 Length:469 Species:Drosophila melanogaster
Sequence 2:XP_016856805.1 Gene:LHX8 / 431707 HGNCID:28838 Length:363 Species:Homo sapiens


Alignment Length:349 Identity:100/349 - (28%)
Similarity:152/349 - (43%) Gaps:102/349 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly   126 PFGPPSSPES-TSDSKITRNLDDCSGCGRQIQDRFYLSAVEKRWHASCLQCYACRQPLERESSCY 189
            |..|.|||.| .|.|........|:.||.:|.|::.|...:..||..||.|..||..|.|.:|||
Human    42 PLSPSSSPRSMASGSGCPPGKCVCNSCGLEIVDKYLLKVNDLCWHVRCLSCSVCRTSLGRHTSCY 106

  Fly   190 SRDGNIYCKNDYYSFFGTRRCSRCLASISSNELVMRARNLVFHVNCFCCTVCHTPLTKGDQYGII 254
            .:|.:|:||.||:..:|| |||||...|.|.:.|.||:..|:|:.||.|..|...|:.|:::.::
Human   107 IKDKDIFCKLDYFRRYGT-RCSRCGRHIHSTDWVRRAKGNVYHLACFACFSCKRQLSTGEEFALV 170

  Fly   255 DALIYCRTHY-----SIAREGDTASSSMSATYPYSAQFGSPHNDSSSPHSDPSRSIVPTGIFVPA 314
            :..:.||.||     ::.||.:..:                             .|...|..:..
Human   171 EEKVLCRVHYDCMLDNLKREVENGN-----------------------------GISVEGALLTE 206

  Fly   315 SHVINGLPQPARQKGRPRKRKPKDIEAFTANIDLNTEYVDFGRGSHLSSSSRTKRMRTSFKHHQL 379
            ..|.:  |:||                                          ||.||||...||
Human   207 QDVNH--PKPA------------------------------------------KRARTSFTADQL 227

  Fly   380 RTMKSYFAINHNPDAKDLKQLSQKTGLPKRVLQVWFQNARAKWRRMMMKQDGSGLLEKGEGALDL 444
            :.|::.||.::||||:.|::|:::|||.:||:||||||.||:.::.:...               
Human   228 QVMQAQFAQDNNPDAQTLQKLAERTGLSRRVIQVWFQNCRARHKKHVSPN--------------- 277

  Fly   445 DSISVHSPTSFILGGPNS--TPPL 466
                 ||.::.:...|.|  :||:
Human   278 -----HSSSTPVTAVPPSRLSPPM 296

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
apNP_724428.1 LIM1_Lhx2_Lhx9 148..201 CDD:188755 22/52 (42%)
LIM2_Lhx2_Lhx9 206..264 CDD:188763 22/57 (39%)
Homeodomain 368..424 CDD:459649 30/55 (55%)
LHX8XP_016856805.1 LIM1_Lhx7_Lhx8 64..119 CDD:188767 23/54 (43%)
LIM2_Lhx7_Lhx8 126..180 CDD:188769 19/53 (36%)
Homeodomain 216..272 CDD:459649 30/55 (55%)

Return to query results.
Submit another query.