DRSC/TRiP Functional Genomics Resources

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Protein Alignment ap and Ubx

DIOPT Version :10

Sequence 1:NP_724428.1 Gene:ap / 35509 FlyBaseID:FBgn0267978 Length:469 Species:Drosophila melanogaster
Sequence 2:NP_536752.1 Gene:Ubx / 42034 FlyBaseID:FBgn0003944 Length:389 Species:Drosophila melanogaster


Alignment Length:173 Identity:37/173 - (21%)
Similarity:71/173 - (41%) Gaps:30/173 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly   273 ASSSMSATYPYSAQFGSPHNDSSSPHSDPSRSIVPTGIFVPASHVINGLPQ-PARQKGRPRKRKP 336
            |:.::|.....:|...|.|  .:|.|:           |.|...:....|: |.:.|.|      
  Fly   214 ANCTISGAAAQTAAASSLH--QASNHT-----------FYPWMAIAGECPEDPTKSKIR------ 259

  Fly   337 KDIEAFTA-NIDLNTEYVDFGRGS----HLSSSSRTKRMRTSFKHHQLRTMKSYFAINHNPDAKD 396
            .|:..:.. :.|:...|.:...||    .|.::...:|.|.::..:|...::..|..||....:.
  Fly   260 SDLTQYGGISTDMGKRYSESLAGSLLPDWLGTNGLRRRGRQTYTRYQTLELEKEFHTNHYLTRRR 324

  Fly   397 LKQLSQKTGLPKRVLQVWFQNARAKWRRMMMKQDGSGLLEKGE 439
            ..:::....|.:|.:::||||     |||.:|::...:.|..|
  Fly   325 RIEMAHALCLTERQIKIWFQN-----RRMKLKKEIQAIKELNE 362

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
apNP_724428.1 LIM1_Lhx2_Lhx9 148..201 CDD:188755
LIM2_Lhx2_Lhx9 206..264 CDD:188763
Homeodomain 368..424 CDD:459649 12/55 (22%)
UbxNP_536752.1 Homeodomain 296..352 CDD:459649 15/60 (25%)
Blue background indicates that the domain is not in the aligned region.

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