DRSC/TRiP Functional Genomics Resources

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Protein Alignment ap and CG4328

DIOPT Version :9

Sequence 1:NP_724428.1 Gene:ap / 35509 FlyBaseID:FBgn0267978 Length:469 Species:Drosophila melanogaster
Sequence 2:NP_648567.2 Gene:CG4328 / 39405 FlyBaseID:FBgn0036274 Length:544 Species:Drosophila melanogaster


Alignment Length:474 Identity:120/474 - (25%)
Similarity:185/474 - (39%) Gaps:124/474 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly    25 REKSPTPPVAHQGSNQCGSAA----GANNNHPLFRACSSSSCPDICDH--STKPFGNAYGTESFR 83
            |..|....|||  :::..|.:    |:.:||....:.||||.....:.  :.:|.|...||.:..
  Fly    64 RSASTKAGVAH--NDKMASVSRTVNGSCSNHNSSNSSSSSSTNSSSNMAINKQPMGMGPGTGTGM 126

  Fly    84 SYETADRATFEDSAAKFSISRSRTDCTEVS--DETTSGISFKTEPFGPPS---SPES----TSDS 139
            ...|.....          ..:.|.|..::  :.:.:|:.....|..|||   :|::    .|:|
  Fly   127 GTGTGHGPG----------PPNHTHCNRITLGECSLNGMDGFATPAAPPSASNTPQAPLGMASNS 181

  Fly   140 KI---------TRNLDDCSGCGRQIQDRFYLSAVEKRWHASCLQCYACRQPLERESSCYSRDGNI 195
            .:         :..|..|:.|.:.|.||:.:..||..:|..||:|.||  .|....|||:|:|.:
  Fly   182 GMGMELGLAMASPQLSQCAHCCQPICDRYIMRVVENSFHEGCLKCTAC--SLHLVHSCYAREGKL 244

  Fly   196 YCKNDYYSFFGTRRCSRCLASISSNELVMRARNLVFHVNCFCCTVCHTPLTKGDQYGIIDALIYC 260
            ||:.||...:....|..|...|:::|||||....|||:.||.|.||...|.||:||.:....::|
  Fly   245 YCRVDYERLYIRNHCLGCGLKIAADELVMRCHENVFHLKCFACVVCGALLKKGEQYVVKQGQLFC 309

  Fly   261 RTHYSIAREGDTASSSMSATYPYSAQFGSPHNDSSSPHSDPSRSIVPTGIFVPASHVINGLPQPA 325
            |..|....|       |...|.:       :.|.               :|            |.
  Fly   310 RFDYEKEVE-------MLQGYDF-------YGDE---------------LF------------PP 333

  Fly   326 RQKGRPRKRKPKDIEAFTANIDLNTEYVDFGRGSHLSSSSRTKRMRTSFKHHQLRTMKSYFAINH 390
            :..||...::|:.|        |||:                          |.|..|:.|.::.
  Fly   334 KLDGRRGPKRPRTI--------LNTQ--------------------------QRRAFKASFEVSP 364

  Fly   391 NPDAKDLKQLSQKTGLPKRVLQVWFQNARAKWRRMMMK----QDGSGLLEKGEGALDLDSI---- 447
            .|..|..:.|::.|||..|::||||||.|||.:::..|    ....|..:..:....|||.    
  Fly   365 KPCRKVRENLAKDTGLSLRIVQVWFQNQRAKVKKIQKKAKQEPPSKGASDSQDSQESLDSSLATK 429

  Fly   448 ---SVHSPTSFILGGPNST 463
               ..||.:...|..|.||
  Fly   430 IKDEAHSDSESQLESPYST 448

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
apNP_724428.1 LIM1_Lhx2_Lhx9 148..201 CDD:188755 21/52 (40%)
LIM2_Lhx2_Lhx9 206..264 CDD:188763 23/57 (40%)
Homeobox 371..424 CDD:395001 20/52 (38%)
CG4328NP_648567.2 LIM1_Lmx1b 199..251 CDD:188757 22/53 (42%)
LIM 259..313 CDD:295319 23/53 (43%)
COG5576 <332..439 CDD:227863 35/140 (25%)
HOX 341..393 CDD:197696 22/85 (26%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 47 0.796 Domainoid score I4515
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR24208
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
33.010

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