DRSC/TRiP Functional Genomics Resources

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Protein Alignment ap and isl1a

DIOPT Version :10

Sequence 1:NP_724428.1 Gene:ap / 35509 FlyBaseID:FBgn0267978 Length:469 Species:Drosophila melanogaster
Sequence 2:NP_571037.1 Gene:isl1a / 30147 ZFINID:ZDB-GENE-980526-112 Length:349 Species:Danio rerio


Alignment Length:373 Identity:105/373 - (28%)
Similarity:156/373 - (41%) Gaps:106/373 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly   140 KITRNLDDCSGCGRQIQDRFYLS-AVEKRWHASCLQCYACRQPLERESSCYSRDGNIYCKNDYYS 203
            |..|.:..|.|||.||.|::.|. :.:..|||:||:|..|.|.|:...:|:.|||..|||.||..
Zfish     9 KKKRLISLCVGCGNQIHDQYILRVSPDLEWHAACLKCAECNQYLDESCTCFVRDGKTYCKRDYIR 73

  Fly   204 FFGTRRCSRCLASISSNELVMRARNLVFHVNCFCCTVCHTPLTKGDQYGIIDALIYCRTHYSIAR 268
            .:|. :|::|....|.|:.|||||:.|:|:.||.|..|...|..||::.:.:..::||..:.:..
Zfish    74 LYGI-KCAKCNIGFSKNDFVMRARSKVYHIECFRCVACSRQLIPGDEFALREDGLFCRADHDVVE 137

  Fly   269 EGDTASSSMSATYPYSAQFGSPHNDSSSPHSDPSRSIVPTGIFVPASHVINGLPQPARQKG-RPR 332
            .     ::|.|                   .||...:.|......|:.     |..|||.. ||.
Zfish   138 R-----ATMGA-------------------GDPLSPLHPARPLQMAAE-----PISARQPALRPH 173

  Fly   333 KRKPKDIEAFTANIDLNTEYVDFGRGSHLSSSSRTKRMRTSFKHHQLRTMKSYFAINHNPDAKDL 397
            ..|..:                           :|.|:||.....||.|:::.:..|..|||...
Zfish   174 VHKQPE---------------------------KTTRVRTVLNEKQLHTLRTCYNANPRPDALMK 211

  Fly   398 KQLSQKTGLPKRVLQVWFQNARA--KWRRMMMKQ---------------DGSGLL----EKGEGA 441
            :||.:.|||..||::|||||.|.  |.|.::|||               .|:.::    |:.:|.
Zfish   212 EQLVEMTGLSPRVIRVWFQNKRCKDKKRSILMKQLQQQQPNDKTNIQGMTGTPMVATSPERHDGG 276

  Fly   442 LDLDSISVHS-------------------P-----TSFILGGP--NST 463
            |..:.:.|.|                   |     .:|..|||  |||
Zfish   277 LQANQVEVQSYQPPWKVLSDFALQSDIDQPAFQQLVNFSEGGPGSNST 324

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
apNP_724428.1 LIM1_Lhx2_Lhx9 148..201 CDD:188755 24/53 (45%)
LIM2_Lhx2_Lhx9 206..264 CDD:188763 21/57 (37%)
Homeodomain 368..424 CDD:459649 24/57 (42%)
isl1aNP_571037.1 LIM1_Isl 17..71 CDD:188752 24/53 (45%)
LIM2_Isl 79..133 CDD:188760 20/53 (38%)
HOX 181..237 CDD:197696 24/55 (44%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 312..349 7/13 (54%)

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