Protein Alignment ap and lim-7

DIOPT Version :9

• Sequence 1: NP_724428.1
• Gene: ap / 35509
• FlyBaseID: FBgn0267978
• Length: 469
• Species: Drosophila melanogaster
• Sequence 2: NP_491668.1
• Gene: lim-7 / 172236
• WormBaseID: WBGene00002989
• Length: 452
• Species: Caenorhabditis elegans
• Alignment Length: 410
• Identity: 119/410 - (29%)
• Similarity: 184/410 - (44%)
• Gaps: 82/410 - (20%)

  Fly    99 KFSISRSRTDCTEVSDETTSGISFKTEPFGPPSSPESTSDSKITRN-----LDDCSGCGRQIQDR 158
            :||::...|     ||....|..:|.|    |.:.....||.:.:.     :..|:||..:|.||
 Worm    11 QFSLTSPGT-----SDLEIGGSFWKDE----PDTKYLCLDSPVEQRQHQPPMAVCAGCRLEISDR 66

  Fly   159 FYLSA-VEKRWHASCLQCYACRQPLERESSCYSRDGNIYCKNDYYSFFGTRRCSRCLASISSNEL 222
            ::|.. ....:||.||:|..|.:||:...:.:.::|..||::||...| |.|||||.......:|
 Worm    67 YFLRVNPNLEFHAQCLKCVQCSRPLDENQTAFVKNGQTYCRDDYRRLF-TTRCSRCHGDFDKTDL 130

  Fly   223 VMRA--RNLVFHVNCFCCTVCHTPLTKGDQYGIIDALIYCRTHYSIAREGDTASSSMSATYP-YS 284
            ||||  :| |||:|||.|..|...|..|:::.|.:..:|||:........||     ||:.| ||
 Worm   131 VMRAGPQN-VFHLNCFACVACEKRLQTGEEFQIKNNSLYCRSDCRGLDNPDT-----SASVPDYS 189

  Fly   285 AQFGSPHNDSSSPHS-------DPSRSIVPTGIFVPASHVINGLPQPARQKGRPRK---RKPKDI 339
            ....:.:||:::..|       |..||.:        :.:.|....|.   |.|:.   |.|.
 Worm   190 KLNNNNNNDNNNSSSNFDEDEWDEERSTL--------TSLDNNTSSPL---GSPKSDGVRTPL-- 241

  Fly   340 EAFTANIDLNTEYVDFGRGSHLSSSSRTK------RMRTSFKHHQLRTMKSYFAINHNPDAKDLK 398
                      ..:.:.|.|...||..:.|      |:||....:||:.::..::||..|||...:
 Worm   242 ----------FGHHNSGSGGSTSSCGKKKKDKQATRVRTVLNENQLKILRDCYSINSRPDATLKE 296

  Fly   399 QLSQKTGLPKRVLQVWFQNARAKWRRMMMKQDGSGLLEKGEGALD------LDSISVHSPTSFI- 456
            :|.:.|||..||::|||||.|.|.::..::...:.|..:.|..|:      :..:.|...|..|
 Worm   297 RLVEMTGLSARVIRVWFQNKRCKDKKRQIQITENRLNSEREEVLNRVRVNGIGPLMVQPATPHID 361

  Fly   457 --LGGP---------NSTPP 465
              ||||         |.|||
 Worm   362 NTLGGPIDIQHFAQWNGTPP 381

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
ap	NP_724428.1	LIM1_Lhx2_Lhx9	148..201	CDD:188755	18/53 (34%)
		LIM2_Lhx2_Lhx9	206..264	CDD:188763	26/59 (44%)
		Homeobox	371..424	CDD:395001	22/52 (42%)
lim-7	NP_491668.1	LIM1_Isl	56..110	CDD:188752	18/53 (34%)
		LIM	118..172	CDD:413332	24/54 (44%)
		HOX	267..321	CDD:197696	23/53 (43%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
Isobase	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	1	0.960	-	-
	2	1.870