DRSC/TRiP Functional Genomics Resources

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Protein Alignment ap and Lhx9

DIOPT Version :10

Sequence 1:NP_724428.1 Gene:ap / 35509 FlyBaseID:FBgn0267978 Length:469 Species:Drosophila melanogaster
Sequence 2:NP_001036042.1 Gene:Lhx9 / 16876 MGIID:1316721 Length:397 Species:Mus musculus


Alignment Length:376 Identity:161/376 - (42%)
Similarity:213/376 - (56%) Gaps:73/376 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly   104 RSRTDCTEVSDETTSGISFKTEPFG-PPSSPESTSDSKITRNLDDCSGCGRQIQDRFYLSAVEKR 167
            ||:|:.     ..|.|........| ||.|||..:         .|:|||.:|.||:||.||:|:
Mouse    40 RSKTEA-----RLTKGTQLNGRDAGMPPLSPEKPA---------LCAGCGGKISDRYYLLAVDKQ 90

  Fly   168 WHASCLQCYACRQPLERESSCYSRDGNIYCKNDYYSFFGTRRCSRCLASISSNELVMRARNLVFH 232
            ||..||:|..|:..||.|.:|:::||:||||.|||..|..:||:||...||::|:|||||:.|:|
Mouse    91 WHLRCLKCCECKLALESELTCFAKDGSIYCKEDYYRRFSVQRCARCHLGISASEMVMRARDSVYH 155

  Fly   233 VNCFCCTVCHTPLTKGDQYGIIDALIYCRTHYSIAREGDTASSSMSATYPYSAQFGSPHNDSSSP 297
            ::||.|:.|:..||.||.:|:.|:|:|||.|:....:|:         ||....:......|.  
Mouse   156 LSCFTCSTCNKTLTTGDHFGMKDSLVYCRAHFETLLQGE---------YPPQLSYTELAAKSG-- 209

  Fly   298 HSDPSRSIVPTGIFVPASHVINGLPQPARQKGRPRKRKPKDIEAFTANIDLNTEYVDFGRG---- 358
                       |:.:|   ..||  ....|||||||||         :..|..:.|::..|    
Mouse   210 -----------GLALP---YFNG--TGTVQKGRPRKRK---------SPALGVDIVNYNSGCNEN 249

  Fly   359 --SHLS-------SSSRTKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLSQKTGLPKRVLQVW 414
              .||.       .|.:||||||||||||||||||||||||||||||||||:|||||.|||||||
Mouse   250 EADHLDRDQQPYPPSQKTKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQVW 314

  Fly   415 FQNARAKWRRMMMKQDGSGLLEKGEGALDLDSISVHSPTSFILGGPNSTPP 465
            |||||||:||.:::|:..| ::|.:|.      |:.:|.|...|.  .|||
Mouse   315 FQNARAKFRRNLLRQENGG-VDKADGT------SLPAPPSADSGA--LTPP 356

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
apNP_724428.1 LIM1_Lhx2_Lhx9 148..201 CDD:188755 28/52 (54%)
LIM2_Lhx2_Lhx9 206..264 CDD:188763 28/57 (49%)
Homeodomain 368..424 CDD:459649 52/55 (95%)
Lhx9NP_001036042.1 LIM1_Lhx2 61..124 CDD:188853 33/71 (46%)
LIM2_Lhx2_Lhx9 129..187 CDD:188763 28/57 (49%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 248..272 7/23 (30%)
Homeodomain 268..324 CDD:459649 52/55 (95%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 330..365 10/36 (28%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 378..397
Blue background indicates that the domain is not in the aligned region.

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