DRSC/TRiP Functional Genomics Resources

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Protein Alignment scaf and CG4053

DIOPT Version :10

Sequence 1:NP_610180.1 Gene:scaf / 35505 FlyBaseID:FBgn0033033 Length:655 Species:Drosophila melanogaster
Sequence 2:NP_650601.2 Gene:CG4053 / 42070 FlyBaseID:FBgn0038482 Length:265 Species:Drosophila melanogaster


Alignment Length:251 Identity:64/251 - (25%)
Similarity:101/251 - (40%) Gaps:37/251 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly   414 TRNKRTKPTGVKD------LDANFAEIPWQAMILRESSKTLICGGAIIGDQFVLSSASCVNGLPV 472
            ||.||.....:.|      .:|.....|:|..| :...||.||.|.|:.:|::|::..|.....:
  Fly    20 TRGKRLDNRKLLDNRIVGGQEAEDGVAPYQVSI-QTIWKTHICSGVILNEQWILTAGHCALDFSI 83

  Fly   473 TDIRVKAGEWELGSTNEPL-PFQLTGVKTVDVHPDYD-PSTNSHDLAIIRLERRLEFASHIQPIC 535
            .|:|:..|      ||:.| |.|........||..|| |...::|:|:|.:...:.|....|.:.
  Fly    84 EDLRIIVG------TNDRLEPGQTLFPDEALVHCLYDIPYVYNNDIALIHVNESIIFNDRTQIVE 142

  Fly   536 ISDEDPKDSEQCFTSGWGKQALSIHEEGALMHVTDTLPQARSEC--------SADSSSVCSATK- 591
            :|.|.|........:|||....|......|..:..|: .|..||        ..|...:|:.|: 
  Fly   143 LSREQPPAGSTVTLTGWGAPESSYPTVQYLQTLNLTI-IAHEECRERWDFHDGIDIGHICTFTRE 206

  Fly   592 -FDSCQFDVGSALACGSGSSVRLKGIFAGENSCGEGQTVRFAKPDIKWINTAFAEN 646
             ..:|..|.|..|....    :|.|:.....:||.|.      ||: :.||.:.::
  Fly   207 GEGACSGDSGGPLMWEG----KLVGLVNWGRACGVGM------PDM-YANTVYYQD 251

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
scafNP_610180.1 Atrophin-1 <63..>338 CDD:460830
CLIP_SPH_Scar 343..408 CDD:465747
Tryp_SPc 428..616 CDD:238113 51/199 (26%)
CG4053NP_650601.2 Tryp_SPc 35..256 CDD:238113 59/236 (25%)
Blue background indicates that the domain is not in the aligned region.

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