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Protein Alignment scaf and MP1

DIOPT Version :9

Sequence 1:	NP_610180.1	Gene:	scaf / 35505	FlyBaseID:	FBgn0033033	Length:	655	Species:	Drosophila melanogaster
Sequence 2:	NP_001303421.1	Gene:	MP1 / 40541	FlyBaseID:	FBgn0027930	Length:	400	Species:	Drosophila melanogaster

Alignment Length:	329	Identity:	82/329 - (24%)
Similarity:	130/329 - (39%)	Gaps:	96/329 - (29%)

- Green bases have known domain annotations that are detailed below.

  Fly   394 CC---RDPNYVDPWPVNLAGVCATRNKRTKPT---GVK------DLDANFA------------EI 434
            ||   |..|....|     |......:.||||   |.|      :...||.            |.
  Fly    90 CCANSRMRNQQPQW-----GNHPQPTQTTKPTKRSGTKLLPMAPNCGENFGDRVVGGNETTKREF 149

  Fly   435 PWQAMILRESSKT-----LICGGAIIGDQFVLSSASCVNGLP----VTDIRVKAGEWELGSTNEP 490
            ||.|:|  |.:|.     ..|||::|..::||::|.||:.:|    :|.:|:  |||: .|||..
  Fly   150 PWMALI--EYTKPGNVKGHHCGGSLINHRYVLTAAHCVSAIPSDWELTGVRL--GEWD-ASTNPD 209

  Fly   491 LPFQLTGVKT-----VDV-------HPDYDPSTNS--HDLAIIRLERRLEFASHIQPICISDEDP 541
            ......|.:.     ||.       ||.|..::..  :|:|::||...::::..|.|:|:    |
  Fly   210 CTVGKNGRRDCNEPYVDYPVEERIPHPQYPGNSRDQLNDIALLRLRDEVQYSDFILPVCL----P 270

  Fly   542 KDSEQ---------CFTSGWGKQALSIHEEGALMHVTDTLPQARSEC---------SADSSSVCS 588
            ..:.|         ...:|||:...:......|....||:|  .|||         :..:..:|:
  Fly   271 TLASQHNNIFLGRKVVVAGWGRTETNFTSNIKLKAELDTVP--TSECNQRYATQRRTVTTKQMCA 333

  Fly   589 --ATKFDSCQFDVGSALA----CGSGSSVRLKGIFA-GENSCG-EGQTVRFAKPD--IKWINTAF 643
              ....|||:.|.|..|.    ....|:..:.|:.: |...|| :|....:.:.:  :.||
  Fly   334 GGVEGVDSCRGDSGGPLLLEDYSNGNSNYYIAGVVSYGPTPCGLKGWPGVYTRVEAYLNWI---- 394

  Fly   644 AENN 647
             |||
  Fly   395 -ENN 397

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.