DRSC/TRiP Functional Genomics Resources

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Protein Alignment scaf and CG18223

DIOPT Version :10

Sequence 1:NP_610180.1 Gene:scaf / 35505 FlyBaseID:FBgn0033033 Length:655 Species:Drosophila melanogaster
Sequence 2:NP_649077.1 Gene:CG18223 / 40068 FlyBaseID:FBgn0036832 Length:322 Species:Drosophila melanogaster


Alignment Length:241 Identity:54/241 - (22%)
Similarity:88/241 - (36%) Gaps:73/241 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly   450 CGGAIIGDQFVLSSASCVNGLPVTDIR----------VKAGEWELGSTNEPLPFQLTGVKTVDVH 504
            |||.||...::|:||.|     ..|.|          |.||......:.:.|...:. ||.:.| 
  Fly    79 CGGVIISRTYILTSAHC-----AMDKRKIVHRSRVLVVVAGTTNRLKSRKGLSLNME-VKKIFV- 136

  Fly   505 PDYDPSTNSHDLAIIRLERRLEFASH-IQPICISDEDPKDSEQCFTSGWGKQALSIHEEGAL--- 565
            ||.....|::::|::.|.::|...:. :..|.:...||:........|||:    |.:.|.|   
  Fly   137 PDKFTVFNTNNIALMMLAKKLPLDNPLVGVINLPTADPEPGLNYTVLGWGR----IFKGGPLASD 197

  Fly   566 -MHV-TDTLPQARSE------------------------CSADSSS--VCSATKFDSCQFDVGSA 602
             :|: .:.||:...|                        |:.|:.|  :.:.|.|....:.||  
  Fly   198 ILHIDVELLPRDICEKKVHIFKEEMMCAGNLNNTMDENPCAGDTGSPLIFNETVFGVVSYRVG-- 260

  Fly   603 LACGSGSSVRLKGIFAGENSCGEGQTVRFAKPDIKWINTAFAENNK 648
              |||.:   |..|:..            ....:.||| ....||:
  Fly   261 --CGSKT---LPSIYTN------------VYMHMDWIN-GIMNNNE 288

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
scafNP_610180.1 Atrophin-1 <63..>338 CDD:460830
CLIP_SPH_Scar 343..408 CDD:465747
Tryp_SPc 428..616 CDD:238113 48/207 (23%)
CG18223NP_649077.1 Tryp_SPc 60..280 CDD:214473 49/230 (21%)
Blue background indicates that the domain is not in the aligned region.

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