DRSC/TRiP Functional Genomics Resources

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Protein Alignment scaf and CG3088

DIOPT Version :10

Sequence 1:NP_610180.1 Gene:scaf / 35505 FlyBaseID:FBgn0033033 Length:655 Species:Drosophila melanogaster
Sequence 2:NP_648334.1 Gene:CG3088 / 39115 FlyBaseID:FBgn0036015 Length:252 Species:Drosophila melanogaster


Alignment Length:212 Identity:54/212 - (25%)
Similarity:84/212 - (39%) Gaps:42/212 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly   450 CGGAIIGDQFVLSSASCVNGLPVTDIRVKAGEWELGSTNEPLPFQLTGVK----TVDVHPDYDPS 510
            |.|.||||.::|:||.|:.                ||:...:.|..|.:.    ||.|......:
  Fly    55 CSGTIIGDTWILTSAQCLT----------------GSSGVTIYFGATRLSQAQFTVTVGTSEYVT 103

  Fly   511 TNSHDLAIIRLERRLEFASHIQPICISDEDPKDSEQCFTS------GWGKQALSIHEEGALMHVT 569
            .|.| ||::|:. |:.|::.:..:.:  ...::..|.:.:      |||....|.....||..| 
  Fly   104 GNQH-LALVRVP-RVGFSNRVNRVAL--PSLRNRSQRYENWWANVCGWGVTTFSNGLTDALQCV- 163

  Fly   570 DTLPQARSECSADSSS-------VCSATKF--DSCQFDVGSALACGSGSSVRLKGIFAGENSCGE 625
            |....:.:||.|...|       :|:.|..  .:|..|.||.|.....|:|.....|...|.|..
  Fly   164 DLQIMSNNECIAFYGSTTVSDQILCTRTPSGRSTCFGDAGSPLITKQDSTVVGISAFVASNGCTL 228

  Fly   626 GQTVRFAK--PDIKWIN 640
            |....||:  ..:.||:
  Fly   229 GLPAGFARITSALDWIH 245

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
scafNP_610180.1 Atrophin-1 <63..>338 CDD:460830
CLIP_SPH_Scar 343..408 CDD:465747
Tryp_SPc 428..616 CDD:238113 46/184 (25%)
CG3088NP_648334.1 Tryp_SPc 29..244 CDD:214473 52/209 (25%)
Blue background indicates that the domain is not in the aligned region.

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