DRSC/TRiP Functional Genomics Resources

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Protein Alignment scaf and Jon65Aiv

DIOPT Version :10

Sequence 1:NP_610180.1 Gene:scaf / 35505 FlyBaseID:FBgn0033033 Length:655 Species:Drosophila melanogaster
Sequence 2:NP_648012.1 Gene:Jon65Aiv / 38682 FlyBaseID:FBgn0250815 Length:271 Species:Drosophila melanogaster


Alignment Length:247 Identity:51/247 - (20%)
Similarity:95/247 - (38%) Gaps:55/247 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly   428 DANFAEIPWQ-AMILRESS-KTLICGGAIIGDQFVLSSASCVNGLPVTDIRVKAGEWELGSTNEP 490
            :|...:.|:| .:.|:.|: .:..|||::||..:||::|.|.:|:....:       .||:|   
  Fly    43 NAAVGQFPYQVGLSLKLSALSSAWCGGSLIGSTWVLTAAHCTDGVQSVTV-------YLGAT--- 97

  Fly   491 LPFQLTGVKT------------VDVHPDYDPSTNSHDLAIIRLERRLEFASHIQPICISDEDPKD 543
                   |:|            :.:|..::.:...:|:::|::. ....:|.|..:.:    |..
  Fly    98 -------VRTSAEITHTVSSSDIIIHSGWNSANLRNDISLIKIP-ATSSSSRISAVKL----PSI 150

  Fly   544 SEQCFT--------SGWGKQALSIHEEGALMHVTDTLPQARSECS-------ADSSSVCSAT--K 591
            |....|        ||||:.:.:.......:...|......::|:       ...|::|.||  .
  Fly   151 SNSYSTFVGDVAVASGWGRTSDTSSGVATNLQYVDLTVITNTKCAQTYGTSVVTDSTLCVATTDA 215

  Fly   592 FDSCQFDVGSALACGSGSSVRLKGIFAGENSCGEGQTVRFAKPD--IKWINT 641
            ..:|..|.|..|...|.|.......|.....|.:|....|.:..  :.||.|
  Fly   216 KSTCNGDSGGPLVLKSSSEQIGLTSFGASAGCEKGYPAAFTRVTSYLDWIKT 267

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
scafNP_610180.1 Atrophin-1 <63..>338 CDD:460830
CLIP_SPH_Scar 343..408 CDD:465747
Tryp_SPc 428..616 CDD:238113 44/218 (20%)
Jon65AivNP_648012.1 Tryp_SPc 37..265 CDD:214473 48/243 (20%)
Blue background indicates that the domain is not in the aligned region.

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