DRSC/TRiP Functional Genomics Resources

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Protein Alignment scaf and CG10477

DIOPT Version :10

Sequence 1:NP_610180.1 Gene:scaf / 35505 FlyBaseID:FBgn0033033 Length:655 Species:Drosophila melanogaster
Sequence 2:NP_648010.1 Gene:CG10477 / 38679 FlyBaseID:FBgn0035661 Length:272 Species:Drosophila melanogaster


Alignment Length:225 Identity:56/225 - (24%)
Similarity:98/225 - (43%) Gaps:28/225 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly   433 EIPWQ-AMILRESSKTLICGGAIIGDQFVLSSASCVNGLPVTDIRVKAGEWELGSTNEPLPFQLT 496
            :.|:| .:..:.|:.:..|||:||.:.:||::|.|..|  .:.:.:..|  ....|:..|..:::
  Fly    50 QFPYQVGLSFKSSAGSWWCGGSIIANTWVLTAAHCTKG--ASSVTIYYG--STVRTSAKLKKKVS 110

  Fly   497 GVKTVDVHPDYDPSTNSHDLAIIRLERRLEFASHIQPICI----SDEDPKDSEQCFTSGWGKQ-- 555
            ..|.|. |..|:.:|..:|:::|:.. .:.|...|..|.:    |.......:....||||:.  
  Fly   111 SSKFVQ-HAGYNAATLRNDISLIKTP-SVTFTVSINKIALPAIASSYSTYAGQTAVASGWGRTSD 173

  Fly   556 ---ALSIHEEGALMHV-TDTLPQARSECSADSSSV-C--SATKFDSCQFDVGSALACGSGSSVRL 613
               |::.:.:.|...| |:.:.|.....|..:|.| |  |..|..:||.|.|..||..:    ||
  Fly   174 SSIAVATNLQYAQFQVITNAVCQKTFGSSVVTSGVICVESINKKSTCQGDSGGPLALNN----RL 234

  Fly   614 KGI--FAGENSCGEGQTVRFAKPD--IKWI 639
            .|:  |.....|.:.....|.:..  :.||
  Fly   235 IGVTSFVSSKGCEKNAPAGFTRVTSYLDWI 264

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
scafNP_610180.1 Atrophin-1 <63..>338 CDD:460830
CLIP_SPH_Scar 343..408 CDD:465747
Tryp_SPc 428..616 CDD:238113 50/196 (26%)
CG10477NP_648010.1 Tryp_SPc 39..264 CDD:214473 54/223 (24%)
Blue background indicates that the domain is not in the aligned region.

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