DRSC/TRiP Functional Genomics Resources

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Protein Alignment scaf and CG15873

DIOPT Version :10

Sequence 1:NP_610180.1 Gene:scaf / 35505 FlyBaseID:FBgn0033033 Length:655 Species:Drosophila melanogaster
Sequence 2:NP_611910.2 Gene:CG15873 / 37898 FlyBaseID:FBgn0035003 Length:297 Species:Drosophila melanogaster


Alignment Length:215 Identity:55/215 - (25%)
Similarity:96/215 - (44%) Gaps:41/215 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly   441 LRESSKTLICGGAIIGDQFVLSSASCVNGLPVTDIRVKAG------EWELGSTNEPLPFQLTGVK 499
            :|.......|.|.::..:.||::|.|     :|| |.||.      ....|.......:..:..:
  Fly    60 VRHRGDNHFCSGVLVSSRAVLTAAHC-----LTD-RYKASMNPRGIRVVFGHITRLAVYDESDFR 118

  Fly   500 TVD---VHPDYDPSTNSHDLAIIRLERRLEFASH-IQPICI-SDEDPKDSEQCFTSGWGKQALSI 559
            :||   |||:|: ....:||||:||..|::.::| :.|:.: ...:....:.|.|.|||:    |
  Fly   119 SVDRLVVHPEYE-RYKKNDLAILRLSERVQSSNHDVLPLLMRKTANVTYGDTCITLGWGQ----I 178

  Fly   560 HEEG----ALMHVTDTLPQARSEC-------SADSSSVCSATKFDS--CQFDVGSALACGSGSSV 611
            ::.|    .|::: |.:.:..|.|       :|| .:||:....:|  |..|:|..|.|...   
  Fly   179 YQHGPYSNELVYL-DVILRPPSLCQKHYDTFTAD-HNVCTEPVGESMNCAGDMGGPLLCKGA--- 238

  Fly   612 RLKGIFAGENSCGEGQTVRF 631
             |.|:..|...|..|:.::|
  Fly   239 -LFGLIGGHMGCAGGKAMKF 257

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
scafNP_610180.1 Atrophin-1 <63..>338 CDD:460830
CLIP_SPH_Scar 343..408 CDD:465747
Tryp_SPc 428..616 CDD:238113 50/198 (25%)
CG15873NP_611910.2 Tryp_SPc 59..250 CDD:238113 52/206 (25%)
Blue background indicates that the domain is not in the aligned region.

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