DRSC/TRiP Functional Genomics Resources

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Protein Alignment scaf and CG30283

DIOPT Version :10

Sequence 1:NP_610180.1 Gene:scaf / 35505 FlyBaseID:FBgn0033033 Length:655 Species:Drosophila melanogaster
Sequence 2:NP_611587.2 Gene:CG30283 / 37454 FlyBaseID:FBgn0260477 Length:273 Species:Drosophila melanogaster


Alignment Length:235 Identity:66/235 - (28%)
Similarity:106/235 - (45%) Gaps:37/235 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly   428 DANFAEIPWQAMILRESSKTLICGGAIIGDQFVLSSASCV-NGLPVTDIRVKAGEWELGSTNEPL 491
            :|..|..||.||::.|..  ..|||.:|.::|||:||.|: ||    :::|:     ||......
  Fly    48 NAPVASAPWMAMVMGEGG--FHCGGTLITNRFVLTSAHCIANG----ELKVR-----LGVLEREA 101

  Fly   492 PFQLTGVKTVDVHPDYDPSTNSHDLAIIRLERRLEFASHIQPICISDEDP--KDSEQCF----TS 550
            ..|...|..:.||.||  ..:.||||::||.:|:.::.:|.|||:. .||  |:.::..    |.
  Fly   102 EAQKFAVDAMFVHTDY--YFDQHDLALLRLAKRVHYSDNISPICLL-LDPLVKNIDEHIVKFRTY 163

  Fly   551 GWGKQALSIHEEGALMHVTDTLPQARSECS-------ADSSSVCS-ATKFDSCQFDVGSAL-ACG 606
            ||||  ........::..|......||||:       .:.:.:|: :...::|..|.|..| |..
  Fly   164 GWGK--TESRSSSRMLQKTSLFNLHRSECAKQYPHQQINRNHICAESANANTCNGDSGGPLTAIV 226

  Fly   607 SGSSVRLKGIFA----GENSCGEGQTVRFAKPDIKWI-NT 641
            :...|::...|.    |...|.:..........:.|| ||
  Fly   227 TYDHVQMVFQFGVTSFGHADCSKATVFTNVMTHLDWIVNT 266

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
scafNP_610180.1 Atrophin-1 <63..>338 CDD:460830
CLIP_SPH_Scar 343..408 CDD:465747
Tryp_SPc 428..616 CDD:238113 59/203 (29%)
CG30283NP_611587.2 Tryp_SPc 42..263 CDD:214473 62/230 (27%)
Blue background indicates that the domain is not in the aligned region.

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