DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment scaf and CG17572

DIOPT Version :10

Sequence 1:NP_610180.1 Gene:scaf / 35505 FlyBaseID:FBgn0033033 Length:655 Species:Drosophila melanogaster
Sequence 2:NP_609941.2 Gene:CG17572 / 35182 FlyBaseID:FBgn0032753 Length:385 Species:Drosophila melanogaster


Alignment Length:193 Identity:51/193 - (26%)
Similarity:85/193 - (44%) Gaps:36/193 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly   450 CGGAIIGDQFVLSSASC----VNGLPVTDIRVKAGEWELGS------TNEPLPFQLT-GVKTVDV 503
            |.||:|..:.:|::|.|    .:|..::.:||  ||::..|      |....|..:. .:..|.|
  Fly   160 CAGAVIARRVILTAAHCALAKADGHRLSSVRV--GEYDTSSDPDCANTGFCAPRSVNHAISHVIV 222

  Fly   504 HPDYDPSTNSHDLAIIRLERRLEFASHIQPICISDEDPK--DSEQCFTSGWGKQALSIHEEGALM 566
            ||||......||:|::.|:..|.::...||||:......  ..::...:||||.:.|...:..:.
  Fly   223 HPDYKQGQYHHDIALLVLKTPLNYSVATQPICLQKTRANLVVGKRATIAGWGKMSTSSVRQPEMS 287

  Fly   567 HVTDTLPQARSECSADSSSVCSATKFDSCQFDVGSALACGSGSSVRLKGIFAGENSCGEGQTV 629
            |:...|                 |.:|.|..:.||..|..|.:|:..:.:.||    |||:.|
  Fly   288 HLDVPL-----------------TSWDLCLRNYGSTGALESPNSIEGQWMCAG----GEGKDV 329

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
scafNP_610180.1 Atrophin-1 <63..>338 CDD:460830
CLIP_SPH_Scar 343..408 CDD:465747
Tryp_SPc 428..616 CDD:238113 45/178 (25%)
CG17572NP_609941.2 Tryp_SPc 138..381 CDD:238113 51/193 (26%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.