DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment scaf and Jon25Biii

DIOPT Version :10

Sequence 1:NP_610180.1 Gene:scaf / 35505 FlyBaseID:FBgn0033033 Length:655 Species:Drosophila melanogaster
Sequence 2:NP_608881.1 Gene:Jon25Biii / 33706 FlyBaseID:FBgn0031653 Length:258 Species:Drosophila melanogaster


Alignment Length:213 Identity:51/213 - (23%)
Similarity:82/213 - (38%) Gaps:47/213 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly   450 CGGAIIGDQFVLSSASCVNGLPVTDIRVKAGEWELGSTNEPLPFQLTGVKTVDVHPDYDPSTNSH 514
            |||:||...:||::..|: |...:.|......|.   ||.    |.|  .||. :.::...:|: 
  Fly    62 CGGSIIAHDWVLTAEHCI-GDAASVIVYFGATWR---TNA----QFT--HTVG-NGNFIKHSNA- 114

  Fly   515 DLAIIRLERRLEFASHIQPICISDEDPKDSEQ--------CFTSGWGKQALSIHEEGAL---MHV 568
            |:|:||:. .::|...:..:    |.|..:::        ....|||    ..::...|   :..
  Fly   115 DIALIRIP-HVDFWHMVNKV----ELPSYNDRYNNYNEWWAVACGWG----GTYDGSPLPDWLQC 170

  Fly   569 TDTLPQARSEC-----SADSSSVCSATKFDS---CQFDVGSALACGSGSSVRLKGI--FAGENSC 623
            .|.......||     |...:.:|:.| .|.   |..|.|..|....||  :|.|:  |...|.|
  Fly   171 VDLQIVHNEECGWTYGSVGDNVICTRT-VDGKSICGGDSGGPLVTHDGS--KLVGVSNFVSSNGC 232

  Fly   624 GEGQTVRFAKP--DIKWI 639
            ..|....|.:.  .:.||
  Fly   233 QSGAPAGFQRVTYHLDWI 250

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
scafNP_610180.1 Atrophin-1 <63..>338 CDD:460830
CLIP_SPH_Scar 343..408 CDD:465747
Tryp_SPc 428..616 CDD:238113 43/184 (23%)
Jon25BiiiNP_608881.1 Tryp_SPc 37..253 CDD:238113 51/213 (24%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.