DRSC/TRiP Functional Genomics Resources

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Protein Alignment scaf and sphinx1

DIOPT Version :10

Sequence 1:NP_610180.1 Gene:scaf / 35505 FlyBaseID:FBgn0033033 Length:655 Species:Drosophila melanogaster
Sequence 2:NP_729255.2 Gene:sphinx1 / 318005 FlyBaseID:FBgn0052383 Length:253 Species:Drosophila melanogaster


Alignment Length:217 Identity:41/217 - (18%)
Similarity:77/217 - (35%) Gaps:58/217 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly   452 GAIIGDQFVLSSASCVNGLPVTDIRVKAGEWELGSTNEPLPFQLTGVKTVDVHPDYDPSTNSHDL 516
            |.||.:|::|:..        |.::....|..|.|......|.:..:...:....||   |.|.:
  Fly    58 GTIISNQWILTVK--------TVLKYSYIEVHLASRRSYRGFDIIRIYKENFRFHYD---NDHVI 111

  Fly   517 AII-----RLERRLE-------------FASHIQPICISDEDPKDSEQCFTSGWG--KQALSIHE 561
            |::     :.:||::             :..::..:|               |:|  |:...:.|
  Fly   112 ALVKCPYQKFDRRMDRVRVPAYDTRFERYVGNMTMVC---------------GYGTEKRHAKLPE 161

  Fly   562 EGALMHVTDTLPQARSECSADSS-----SVC-SATKFDS-CQFDVGSALACGSGSSVRLKGIFAG 619
               .|...:......:||:...:     .:| |...|.. |:.|:|.|:.....:...:..|:..
  Fly   162 ---WMRCIEVEVMNNTECAKYYTPLKWYEMCTSGEGFKGVCEGDIGGAVVTMGPNPTFIGIIWLM 223

  Fly   620 ENSCGEG-QTVRFAKPD-IKWI 639
            ..:|..| .:|.....| ||||
  Fly   224 PENCSIGYPSVHIRVSDHIKWI 245

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
scafNP_610180.1 Atrophin-1 <63..>338 CDD:460830
CLIP_SPH_Scar 343..408 CDD:465747
Tryp_SPc 428..616 CDD:238113 32/190 (17%)
sphinx1NP_729255.2 Tryp_SPc 25..245 CDD:473915 39/215 (18%)
Blue background indicates that the domain is not in the aligned region.

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