DRSC/TRiP Functional Genomics Resources

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Protein Alignment Not3 and Rga

DIOPT Version :10

Sequence 1:NP_610176.1 Gene:Not3 / 35501 FlyBaseID:FBgn0033029 Length:844 Species:Drosophila melanogaster
Sequence 2:NP_730966.1 Gene:Rga / 40683 FlyBaseID:FBgn0017550 Length:585 Species:Drosophila melanogaster


Alignment Length:681 Identity:144/681 - (21%)
Similarity:218/681 - (32%) Gaps:252/681 - (37%)


- Green bases have known domain annotations that are detailed below.


  Fly   242 SGTATTDSNNSNETSGSPSSVTSGGSPSQSPVTVQQ---ILNTSSQ---GAASSGSSAASAALFQ 300
            ||...||..||     .|.:...|.:|.|.....||   ..|.::|   |..:..|...:|.||.
  Fly    39 SGMFQTDFANS-----YPGTANYGQAPQQQQQQQQQPQLSPNRNAQLSVGGPAISSGNRNANLFG 98

  Fly   301 Q----QLTAAQSNG----NNVGYASDTSAASSSATTSTDPAGGTVAVN--CVGG----------L 345
            |    :..|.|..|    :|:|....|....    ..|...||....|  ..||          |
  Fly    99 QRQFVERRAMQGLGSGPMSNMGNFMQTGRGG----YGTGGGGGGPLNNFHVFGGGGGSDTSTPAL 159

  Fly   346 ADKRNKSSESNAL----KLKPQPHQLIKP--TPVR------ATAKLPLSSDTQVNKIVSSTPSKN 398
            .|.....|.:||.    :..||.:.|..|  .|..      ...|.|.|..::........|:  
  Fly   160 LDPTEFPSLTNARGQNDQTLPQSNPLQPPGSKPYGNFFTSFGMVKQPTSEQSEFTMSNEDFPA-- 222

  Fly   399 QQQLPTAASIVATSAMQSQSSIGSCSSTGGTG---------------------ASQSASSGNNPG 442
               ||...:...|:     :::||.:.|||:|                     .|.|.|||:|.|
  Fly   223 ---LPGTQNSDGTT-----NAVGSVAGTGGSGGASTENHLDGTEKPMNSIVVSGSASGSSGSNVG 279

  Fly   443 NNPAVQPN-------------------APTPGQSGIAAAAASTNVVSATIV----SSANVQGQSV 484
               .|..|                   |.:.|..|:...||| .||..:.|    |::.:.|.:.
  Fly   280 ---VVGGNGLGAVGSGIGGLAVGGGGGAGSSGGGGVGGNAAS-GVVGGSHVGLVGSNSGIGGVNS 340

  Fly   485 IQPTPTIAFAAVAKHNTSLLENGPVLQQQLAVTPTVAAIVGAGTQAQQKHVPPLSNLQTNSPHIQ 549
            :                                |...|::|.|           ..|.:.|....
  Fly   341 V--------------------------------PNSNAMMGVG-----------GGLGSGSGSSG 362

  Fly   550 NGLPVSDSTNDNSCNVVDTISLKTMAQDAINRSAIDPNSLNQQQTSSIDLRQPQSQKSLLQHFNS 614
            :|.. .:..||||.|            |.:.:|.:        |||      |..:.:.:    .
  Fly   363 SGAG-GEHLNDNSSN------------DKLVKSGV--------QTS------PDGKVTNI----P 396

  Fly   615 ETNTNQQ-----QLTSQQQQQLQNNSLAATTGSNNGTSTGSGL-MNVANATGQPISGNAKTHACQ 673
            .|..|.|     .||..:..:...|.:..:.|::   .||.|| :|...:.....:|......|:
  Fly   397 ATMVNNQFGMVGLLTFIRAAETDPNLVTLSLGTD---LTGLGLNLNSQESLHTTFAGPFVAQPCR 458

  Fly   674 PQQMATTEAHIPTLLGVTPLGPTPLQKEHQMQFQMMEAAYYHLPQPMDTEKLQTYFHRAPVLTPS 738
            .|.:   |.::|              .|:.:.|.:             .:||     .||||   
  Fly   459 AQDV---EFNVP--------------PEYLINFAI-------------RDKL-----TAPVL--- 485

  Fly   739 HYPQAQMPIYDTVEFYQRLSTETLFFVFYYMEGSKAQYLAAKALKKQSWRFHTKYMMWFQR---- 799
                            ::|..:.|||:||...|...|.:||..|..:.||:|.:..:|..|    
  Fly   486 ----------------KKLQEDLLFFLFYTNIGDMMQLMAAAELHSREWRYHVEEKIWITRIPGI 534

  Fly   800 --HEEPKIINDDYEQGTYIYFDYEKWSQRKK 828
              :|:    |...|:||:.|||.:.|.:..|
  Fly   535 DQYEK----NGTKERGTFYYFDAQSWKRLSK 561

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Not3NP_610176.1 Not3 3..233 CDD:461155
PRK07764 <334..497 CDD:236090 48/230 (21%)
NOT2_3_5 711..836 CDD:461199 32/124 (26%)
RgaNP_730966.1 NOT2_3_5 445..568 CDD:461199 39/175 (22%)
Blue background indicates that the domain is not in the aligned region.

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