DRSC/TRiP Functional Genomics Resources

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Protein Alignment Not3 and cnot3b

DIOPT Version :9

Sequence 1:NP_001260712.1 Gene:Not3 / 35501 FlyBaseID:FBgn0033029 Length:844 Species:Drosophila melanogaster
Sequence 2:NP_956134.1 Gene:cnot3b / 327627 ZFINID:ZDB-GENE-030131-5838 Length:908 Species:Danio rerio


Alignment Length:920 Identity:349/920 - (37%)
Similarity:481/920 - (52%) Gaps:217/920 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MAATRKLQGEIDRCLKKVAEGVETFEDIWKKVHNATNTNQKQKHLQEKYEADLKKEIKKLQRLRD 65
            ||..||||||||||||||.||||.|||||||:|||.|.|||     ||||:||||||||||||||
Zfish     1 MADKRKLQGEIDRCLKKVTEGVEQFEDIWKKLHNAANANQK-----EKYESDLKKEIKKLQRLRD 60

  Fly    66 QIKSWIASAEIKDKSSLLENRRLIETQMERFKVVERETKTKAYSKEGLGAAQKMDPAQRIKDDAR 130
            |||:|:||.|||||..|:|||:||||||||||:||||||||||||||||.|||:||||:.|::..
Zfish    61 QIKTWVASNEIKDKRQLVENRKLIETQMERFKIVERETKTKAYSKEGLGLAQKVDPAQKEKEEVG 125

  Fly   131 NWLTSSISSLQIQIDQYESEIESL-LAGKKKRLDRDKQERMDDLRGKLDRHKFHITKLETLLRLL 194
            .|||::|.:|.:|:||:|||:||| :..:||:.|::||:|:::|:..::||:|||..|||:||:|
Zfish   126 QWLTNTIDTLNMQVDQFESEVESLSVQTRKKKGDKEKQDRIEELKRLIERHRFHIRMLETILRML 190

  Fly   195 DNDGVEAEQVNKIKDDVEYYIDSSQEPDFEENEFIYDDIIGLDEVELSGTATTDSNNSNE----- 254
            |||.::.:.:.|||||||||:||||:||||||||:||| :.|:|:.|....|:.:.:.::     
Zfish   191 DNDSIQVDSIRKIKDDVEYYLDSSQDPDFEENEFLYDD-LDLEEIPLPVVPTSPAGHPDDEIFQH 254

  Fly   255 TSGSPSSVTSGGSPSQSPVTVQQILNTSSQGAASSGSSAASAALFQQQLTAAQSNGNNVGYASDT 319
            :|.:|:|.||......||.|    ..|:|:.....|.|..| .:.|..:    .|||     ..:
Zfish   255 SSSTPTSTTSSSPIPPSPAT----CTTNSEDEKKRGHSTDS-EISQSPI----KNGN-----QSS 305

  Fly   320 SAASSSATTSTDPAGGTVAVNCVGGLADKRNKSSESNALKLKPQPHQLIKPTPVRATAKLPL--- 381
            |.:|||:.:|:.....::::..:..||...:.:|.|::|               .....:||   
Zfish   306 SLSSSSSLSSSSSGASSISLISMATLASSGSSASGSSSL---------------LGNISVPLQNS 355

  Fly   382 ---SSDTQ---------------VNKIVSSTPSKNQQQLPTAASI---------VATSAMQSQSS 419
               ||.||               .:...:||.:.|...|||:||.         ..|.:.|||::
Zfish   356 GSYSSATQQQTQQSQQQHQPKNSASSHSNSTSASNSILLPTSASTSPPNTSTLGPLTPSSQSQTN 420

  Fly   420 IG-SCSSTGGTGASQSASSGNN------------------PGNNPAVQPNAPTPG--QSGIAAA- 462
            :| |.||:.|.|...||.:|.|                  .|:.||....|...|  .||:::| 
Zfish   421 LGMSLSSSLGLGKGTSALTGTNQMPSLVLSGMPASLSGFLSGSTPAPYAQAAAAGCVGSGLSSAI 485

  Fly   463 ---AASTNVVSATIVSSANVQGQ--------------------SVIQPTPTIAFAAVAKHNTSLL 504
               .:|||  |:.:|:|....|.                    :.::|.|.:|.:.|....||..
Zfish   486 GTNISSTN--SSGVVTSLGTNGSLGSTSLLGSGSGILGLGSTFAAVEPLPLLAPSPVGSTLTSGS 548

  Fly   505 ENGPVLQQQLAVTPTVAAIVGAGTQAQQKHVPPLSNLQTNSPHIQNG-----LPVSDSTNDNSCN 564
            ..|.:  .....|...|...|:|||.:    ||      :.|. |||     ..|.|||:|:   
Zfish   549 NVGVI--GSSGGTSGTANATGSGTQPR----PP------SGPK-QNGGSSYSAVVGDSTSDS--- 597

  Fly   565 VVDTISLKTMAQDAINRSAIDPNSLNQQQTSSIDLRQPQSQKSLLQHFNSETNTNQQQLTSQQQQ 629
                         |:|.::...||    |:||::|              :.||    ||......
Zfish   598 -------------ALNSASQSQNS----QSSSLNL--------------AVTN----QLMDSGSS 627

  Fly   630 QLQNNSLAATTGS---NNGTSTGSGLMNVANATGQPI---------------------------- 663
            .|.:.:||.::.|   :...:.|..|:|..::..||.                            
Zfish   628 LLGSMTLAPSSPSPVYSESKAGGGSLLNGPHSYTQPADTIKPQEPPSSLKSMAERVAQGSGLDGE 692

  Fly   664 ------------SGNAKTHACQPQQMATTEAHIPTLLGVTPLGPTPLQKEHQMQFQMMEAAYYHL 716
                        |..|.:......|::.:|..||..|||.||||.||.|:...|..|.|:|:.|:
Zfish   693 LSALHIPSDIFPSSTAPSGTPAAPQLSLSEVSIPPSLGVCPLGPVPLSKDQLYQQAMQESAWAHM 757

  Fly   717 PQPMDTEKLQTYFHRAPVLTPSHYPQAQMPIYDTVEFYQRLSTETLFFVFYYMEGSKAQYLAAKA 781
            |.|.|:|:::.|..|.|..|...:.|...|..|:||||||||||||||:|||:||:|||||||||
Zfish   758 PHPSDSERIRQYLMRNPCPTLPFHHQMPPPHSDSVEFYQRLSTETLFFIFYYLEGTKAQYLAAKA 822

  Fly   782 LKKQSWRFHT 791
            ||||||||||
Zfish   823 LKKQSWRFHT 832

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Not3NP_001260712.1 Not3 3..233 CDD:281986 157/230 (68%)
DUF3682 428..>509 CDD:289231 28/124 (23%)
NOT2_3_5 711..836 CDD:282064 51/81 (63%)
cnot3bNP_956134.1 Not3 3..229 CDD:281986 158/231 (68%)
NOT2_3_5 756..>832 CDD:282064 48/75 (64%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170579328
Domainoid 1 1.000 337 1.000 Domainoid score I1078
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 597 1.000 Inparanoid score I931
OMA 1 1.010 - - QHG53956
OrthoDB 1 1.010 - - D1109812at2759
OrthoFinder 1 1.000 - - FOG0004227
OrthoInspector 1 1.000 - - otm25786
orthoMCL 1 0.900 - - OOG6_101346
Panther 1 1.100 - - LDO PTHR23326
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R834
SonicParanoid 1 1.000 - - X2972
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
1211.940

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