DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment hrm and slc16a13

DIOPT Version :9

Sequence 1:NP_001286141.1 Gene:hrm / 35499 FlyBaseID:FBgn0033028 Length:658 Species:Drosophila melanogaster
Sequence 2:XP_001920250.3 Gene:slc16a13 / 793210 ZFINID:ZDB-GENE-120907-2 Length:502 Species:Danio rerio


Alignment Length:605 Identity:130/605 - (21%)
Similarity:224/605 - (37%) Gaps:198/605 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly    39 KKDDKEYDLVP----PDGGWGWLVLLGSCLTNILIPGTIKSFGVLFSEFTDAFNSSPTKAAWIPA 99
            :|.::|....|    |||||||:|:....:.:.|:.|.|:|.||.|.||...|:.|....:||.:
Zfish     5 QKTEEEQRPCPQGAAPDGGWGWVVVGALFVISALVFGLIRSLGVFFVEFVQYFDESAQAVSWITS 69

  Fly   100 LCYFLYSSLGPVSSILSVKYSYRTVTLLGGASASLGMILSFWASSIEFLYISYGVLVGIGAGLSF 164
            :...:...:.|:.:..|..|..|.|.::||..:.||.||:..|:|:..||::.|::.|:|..|.|
Zfish    70 IGLAMQQLMSPIGAAASNVYGTRPVVMMGGFLSGLGFILASQATSLLHLYLTMGLISGLGWALVF 134

  Fly   165 PPTVYIVTSYFAKLRGLANGLCISGSALGSIILPPLLRWLLETYGYHGSCLIMGGITLNVFVAAL 229
            .||:..|..||.|.|.||.||..:|..|.|....||.::|:|.|.:.|:.||:||::.|:.    
Zfish   135 TPTMASVMQYFTKRRSLAMGLGFTGVGLASFAFSPLFQYLVEAYAWRGALLILGGLSFNMV---- 195

  Fly   230 FYEPVEQHMVRVPRARQALENIPEEEDIGIVMKFENVDEPVPKNEPADKPLLPYNSPPSPLYLPG 294
                                                                             
Zfish   196 ----------------------------------------------------------------- 195

  Fly   295 DERLQFVRSASAAVVQSYSKSGDEFQSRSRKISTPVRLPQRNQTFTPGQLNSQSSLYAVPEGRSS 359
                     |..|::              |.:.||                              
Zfish   196 ---------ACGALI--------------RPLGTP------------------------------ 207

  Fly   360 SNKLTLRNSSKSRLSKRSPSTSSFLYVSTPYHGSTLSFQPKEFSSHLSLRSMGSSGTGHAGDSTG 424
              |:.::..:.::|:|     .||| :|..|                                  
Zfish   208 --KVAVKTENSTKLNK-----CSFL-LSRIY---------------------------------- 230

  Fly   425 QDGSYADVDARGQAQQPQRSKFFDLSLLKDPMYLVILISNSTNAISYTN---FIILLPSFGEAR- 485
                                :.|:||||....::...:     ||::.|   ||..:.....:| 
Zfish   231 --------------------ECFELSLLTHRGFVTYAV-----AITFFNAGYFIPYVHLVAHSRH 270

  Fly   486 -GFNKSLSAYLLSVVSATDLIGRIGGSALSDMGYIPKTWYFVGGLSISGLSLALLPFAWTYSSVC 549
             ||.:..:|:::|:....|::||:.....||:|.|......|....:.||||.|:|.|..|:.:.
Zfish   271 IGFTEYQAAFVISITGVADIVGRVASGWASDLGKIRLLHMLVVWTGLLGLSLMLIPVAVVYAGLL 335

  Fly   550 FWCALFGLASGIYVGITAVIMADMLGTERLTSSYGISLFVNGLLQLVGPPLCNYWFEAVNDYNPL 614
            ....::|..:|....:...::.:::|.||:..:.|:...:.....|:|.||..:..::...|...
Zfish   336 LVSIVYGFCAGAMAPLAFAVVPEIVGIERVLGALGLLQLIESAGGLLGAPLSGWLKDSTGTYTVS 400

  Fly   615 FHALGLTLLAGASLWSFMPW 634
            |.|.|..|:.|..:...:|:
Zfish   401 FIAAGSFLMIGMLIAMTLPY 420

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
hrmNP_001286141.1 2A0113 49..653 CDD:273325 128/595 (22%)
MFS 59..>234 CDD:119392 58/174 (33%)
MFS <449..633 CDD:119392 46/188 (24%)
slc16a13XP_001920250.3 2A0111 11..443 CDD:331689 128/599 (21%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 128 1.000 Domainoid score I5252
eggNOG 1 0.900 - - E1_KOG2504
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D916876at2759
OrthoFinder 1 1.000 - - FOG0000033
OrthoInspector 1 1.000 - - mtm6360
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X70
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
76.820

Return to query results.
Submit another query.