DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment hrm and Slc16a8

DIOPT Version :9

Sequence 1:NP_001286141.1 Gene:hrm / 35499 FlyBaseID:FBgn0033028 Length:658 Species:Drosophila melanogaster
Sequence 2:NP_113932.2 Gene:Slc16a8 / 65200 RGDID:69282 Length:490 Species:Rattus norvegicus


Alignment Length:584 Identity:131/584 - (22%)
Similarity:213/584 - (36%) Gaps:202/584 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly    49 PPDGGWGWLVLLGSC--LTNILIPGTIKSFGVLFSEFTDAFNSSPTKAAWIPALCYFLYSSLGPV 111
            |||||||| |:||:|  :|.... |..|:..|.|.|....|.:..:..||:.::...:....||:
  Rat    12 PPDGGWGW-VVLGACFVITGFAY-GFPKAVSVFFRELKRDFGAGYSDTAWVSSIMLAMLYGTGPL 74

  Fly   112 SSILSVKYSYRTVTLLGGASASLGMILSFWASSIEFLYISYGVLVGIGAGLSFPPTVYIVTSYFA 176
            ||||..::..|.|.|.||..||.||||:.:||.:..||::.|||.|:|..|:|.|::.::..||.
  Rat    75 SSILVTRFGCRPVMLAGGLLASAGMILASFASRLLELYLTAGVLTGLGLALNFQPSLIMLGLYFE 139

  Fly   177 KLRGLANGLCISGSALGSIILPPLLRWLLETYGYHGSCLIMGGITLNVFVAALFYEPVEQHMVRV 241
            :.|.|||||..:||.:....|.||.:.|.|.:|:.|..|:.||:.|:....              
  Rat   140 RRRPLANGLAAAGSPVFLSTLSPLGQLLGERFGWRGGFLLFGGLLLHCCAC-------------- 190

  Fly   242 PRARQALENIPEEEDIGIVMKFENVDEPVPKNEPADKPLLPYNSPPSPLYLPGDERLQFVRSASA 306
                            |.||:      |.|..:|...|                           
  Rat   191 ----------------GAVMR------PPPGPQPRPDP--------------------------- 206

  Fly   307 AVVQSYSKSGDEFQSRSRKISTPVRLPQRNQTFTPGQLNSQSSLYAVPEGRSSSNKLTLRNSSKS 371
                                                         |.|.||:...:|        
  Rat   207 ---------------------------------------------APPGGRARHRQL-------- 218

  Fly   372 RLSKRSPSTSSFLYVSTPYHGSTLSFQPKEFSSHLSLRSMGSSGTGHAGDSTGQDGSYADVDARG 436
                                                                             
  Rat   219 ----------------------------------------------------------------- 218

  Fly   437 QAQQPQRSKFFDLSLLKDPMYLVILISNSTNAISYTNFIILLPSFGEARGFNKSLSAYLLSVVSA 501
                      .||::..|..::|.:::....|:......|||.::.:..|...:.:|:|||:|..
  Rat   219 ----------LDLAVCTDRTFMVYMVTKFLMALGLFVPAILLVNYAKDAGVPDAEAAFLLSIVGF 273

  Fly   502 TDLIGRIGGSALSDMG----YIPKTWYFVGGLSISGLSLALLPFAWTYSSVCFWCALFGLASGIY 562
            .|::.|....||:.:|    ::|  :.|...|..:||:..:...|.:|.::..:|..|||:.|:.
  Rat   274 VDIVARPACGALAGLGRLRPHVP--YLFSLALLANGLTDLISARARSYGTLVAFCIAFGLSYGMV 336

  Fly   563 VGITAVIMADMLGTERLTSSYGISLFVNGLLQLVGPPLCNYWFEAVNDYNPLFHALGL-TLLAG 625
            ..:...::...:|..|..|:.|:.|.|..:..|:|||......:|:.:|..:|:..|. .:|||
  Rat   337 GALQFEVLMATVGAPRFPSALGLVLLVEAVAVLIGPPSAGRLVDALKNYEIIFYLAGSEVVLAG 400

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
hrmNP_001286141.1 2A0113 49..653 CDD:273325 131/584 (22%)
MFS 59..>234 CDD:119392 62/176 (35%)
MFS <449..633 CDD:119392 47/182 (26%)
Slc16a8NP_113932.2 2A0113 14..440 CDD:273325 129/582 (22%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 128 1.000 Domainoid score I5173
eggNOG 1 0.900 - - E1_KOG2504
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D916876at2759
OrthoFinder 1 1.000 - - FOG0000033
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X70
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
65.910

Return to query results.
Submit another query.