DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment hrm and kar

DIOPT Version :9

Sequence 1:NP_001286141.1 Gene:hrm / 35499 FlyBaseID:FBgn0033028 Length:658 Species:Drosophila melanogaster
Sequence 2:NP_001189213.1 Gene:kar / 45883 FlyBaseID:FBgn0001296 Length:612 Species:Drosophila melanogaster


Alignment Length:660 Identity:145/660 - (21%)
Similarity:227/660 - (34%) Gaps:218/660 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 NSQNASKINQKDHKPNGNTNESRHKTVSLINKKDDKEYDLVPPDGG-WGWLVLLGSCLTNILIPG 71
            |.::|.|.:......|||.| ..|...........||    ||||| ..|||::.:.|.|.:|.|
  Fly    37 NGKDAMKPSAPVQNGNGNAN-GTHIEAPCCRDIHGKE----PPDGGARAWLVMVSAFLCNGIIFG 96

  Fly    72 TIKSFGVLFSEFTDAFN-----SSPTKAAWIPALCY---FLYSSLGPVSSILSVKYSYRTVTLLG 128
            .|.::||:.|..||...     .:.:|||.|.||..   ||:|::   :..|:.|...|..|..|
  Fly    97 FINTYGVIHSLLTDRLTKLGDPEASSKAALIGALAIGTTFLFSTM---AGCLTDKIGLRLTTFAG 158

  Fly   129 GASASLGMIL-SFWASSIEFLYISYGVLVGIGAGLSFPPTVYIVTSYFAKLRGLANGLCISGSAL 192
            |..::.|::| ||...:|..||.:||::.|:||.|::.||:.|:..||.:..|..:|...:||::
  Fly   159 GVLSAGGLLLSSFCTENIGALYFTYGIMFGLGAALAYTPTLAILGHYFKRYLGKVSGFVTAGSSV 223

  Fly   193 GSIILPPLLRWLLETYGYHGSCLIMGGITLNVFVAALFYEPVEQHMVRVPRARQALENIPEEEDI 257
            .::||||.|..||.:||..|:..||..::..:.:.:..|:|:.                      
  Fly   224 FTVILPPCLDKLLGSYGLEGTLRIMSLVSAFIILCSFVYKPLH---------------------- 266

  Fly   258 GIVMKFENVDEPVPKNEPADKPLLPYNSPPSPLYLPGDERLQ-FVRSASAAVVQSYSKSGDEFQS 321
                         |..||..|.             ||..|:. |:||....          |...
  Fly   267 -------------PPPEPPKKK-------------PGRSRINLFLRSIINV----------EIWK 295

  Fly   322 RSRKISTPVRLPQRNQTFTPGQLNSQSSLYAVPEGRSSSNKLTLRNSSKSRLSKRSPSTSSFLYV 386
            |.|.:...:.:|                             |.|       .....|......:|
  Fly   296 RKRFVIWALCVP-----------------------------LAL-------FGYFVPYVHMMQFV 324

  Fly   387 STPYHGSTLSFQPKEFSSHLSLRSMGSSGTGHAGDSTGQDGSYADVDARGQAQQPQRSKFFDLSL 451
            .|.:.|.                                     ||:                  
  Fly   325 KTTFPGE-------------------------------------DVN------------------ 334

  Fly   452 LKDPMYLVILISNSTNAISYTNFIILLPSFGEARGFNKSLSAYLLSVVSATDLIGRIGGSALSDM 516
                                      ||                :..:..|..|||:....::||
  Fly   335 --------------------------LP----------------VMCIGITSGIGRLIFGVIADM 357

  Fly   517 GYIPKTWYFVGGLSISGLSLALLPFAWTYSSVCFWCALFGLASGIYVGITAVIMADMLGTERLTS 581
            ..:.:.:.....|...||...|||...:|..:..:..:.||..|.::.:...|..::.|....|.
  Fly   358 PGVNRMYLQQLSLVSIGLVTLLLPLTNSYVILVSFTLVMGLFDGCFISLLGPIAYEICGPSGATQ 422

  Fly   582 SYGISLFVNGLLQLVGPPLCNYWFEAVNDYN-PLFHALGLTLLAGASLWSFMPWINRRKANAEEQ 645
            :.|..|.::.:...||||:....|::.|.|. ||..| ||..|.|:||...:      |...||:
  Fly   423 AIGFLLGLSSIPLTVGPPVAGMIFDSTNSYTLPLILA-GLPPLLGSSLLFLI------KCVKEEE 480

  Fly   646 LDAQIEKAAV 655
            ......:|.|
  Fly   481 NGVSAPRAVV 490

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
hrmNP_001286141.1 2A0113 49..653 CDD:273325 133/615 (22%)
MFS 59..>234 CDD:119392 60/183 (33%)
MFS <449..633 CDD:119392 39/184 (21%)
karNP_001189213.1 MFS 81..459 CDD:119392 118/571 (21%)
MFS_1 124..439 CDD:284993 96/508 (19%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 72 1.000 Domainoid score I2205
eggNOG 1 0.900 - - E1_KOG2504
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D916876at2759
OrthoFinder 1 1.000 - - FOG0000033
OrthoInspector 1 1.000 - - mtm9209
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR11360
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
76.920

Return to query results.
Submit another query.