DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment hrm and slc16a12

DIOPT Version :9

Sequence 1:NP_001286141.1 Gene:hrm / 35499 FlyBaseID:FBgn0033028 Length:658 Species:Drosophila melanogaster
Sequence 2:NP_989310.1 Gene:slc16a12 / 394932 XenbaseID:XB-GENE-1012784 Length:473 Species:Xenopus tropicalis


Alignment Length:621 Identity:137/621 - (22%)
Similarity:237/621 - (38%) Gaps:190/621 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly    26 TNESR--HKTVSLINKKDDKEYDLVPPDGGWGWLVLLGSCLTNILIPGTIKSFGVLFSEFTDAFN 88
            |.|.|  ||               .||||||||::::|.....:......:...:.|.||...|.
 Frog     2 TQEKRNLHK---------------APPDGGWGWMIVIGCFFVTVCTRAVTRCISIFFVEFQSYFA 51

  Fly    89 SSPTKAAWIPALCYFLYSSLGPVSSILSVKYSYRTVTLLGGASASLGMILSFWASSIEFLYISYG 153
            ....:.|||.::.........|:.|.:|..:|.:...:|||..||.|::||.:|:|:|:||::.|
 Frog    52 QDYARTAWIHSIVDCSTMLCAPIGSYVSNHFSCQVGIILGGVLASTGLVLSSFATSLEYLYLTLG 116

  Fly   154 VLVGIGAGLSFPPTVYIVTSYFAKLRGLANGLCISGSALGSIILPPLLRWLLETYGYHGSCLIMG 218
            ||.|:|..|.:.|.:.:|..||.|.:.||.|:.:|||.:|:.||.|:::.|:|.:.:.|:.||:|
 Frog   117 VLTGLGFALCYSPAIAMVGKYFEKRKALAYGIAMSGSGIGTFILAPVVQLLIEQFSWRGALLILG 181

  Fly   219 GITLNVFVAALFYEPV--EQHMVRVPRARQALENIPEEEDIGIVMKFENVDEPVPKNEPADKPLL 281
            |...|:.|......|:  ::..:..|..::.:||.|.:.                          
 Frog   182 GFVSNLCVCGALMRPITLKEDSLHYPLKQEQMENEPTQS-------------------------- 220

  Fly   282 PYNSPPSPLYLPGDERLQFVRSASAAVVQSYSKSGDEFQSRSRKISTPVRLPQRNQTFTPGQLNS 346
                                                                        |:|:|
 Frog   221 ------------------------------------------------------------GRLDS 225

  Fly   347 QSSLYAVPEGRSSSNKLTLRNSSKSRLSKRSPSTSSFLYVSTPYHGSTLSFQPKEFSSHLSLRSM 411
            ..|    |..:..|:|         ||          .|.:           .||:|        
 Frog   226 SCS----PLCQDCSHK---------RL----------CYCT-----------KKEYS-------- 248

  Fly   412 GSSGTGHAGDSTGQDGSYADVDARGQAQQPQRSKFFDLSLLKDPMYLVILISNSTNAISYT-NFI 475
                                                  .||| |.::|:.:|....|...: .|:
 Frog   249 --------------------------------------FLLK-PKFMVLAVSFLFLAYGCSPPFV 274

  Fly   476 ILLPSFGEARGFNKSLSAYLLSVVSATDLIGRIGGSALSDMGYIPKTWY--FVGGLSISGLSLAL 538
            .|:| :....|.:...:|:|:|::...|::|.|....::|..::.|..|  ::..:.:.||....
 Frog   275 YLVP-YALNVGVSNQEAAFLMSILGIIDIVGNITFGWVTDTRFLKKHRYCCYLIAVGLDGLCCLF 338

  Fly   539 LPFAWTYSSVCFWCALFGLASGIYVGITAVIMADMLGTERLTSSYGISLFVNGLLQLVGPPLCNY 603
            ||....:..:..:..:||...|.||.:..|:..|::||..|:|:.|:..|::.:..||.||:..:
 Frog   339 LPILTRFQLLVPFSVMFGYFDGAYVALIPVVTGDVVGTSSLSSALGVVFFLHAVPYLVSPPIAGW 403

  Fly   604 WFEAVNDYNPLFHALGLTLLAGASLWSFMPWINRRK 639
            ..:...||...|...|.:::..|.|.:....|||.|
 Frog   404 LVDTTGDYTAAFLLSGFSMIFCAVLLALAKIINRIK 439

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
hrmNP_001286141.1 2A0113 49..653 CDD:273325 132/596 (22%)
MFS 59..>234 CDD:119392 55/174 (32%)
MFS <449..633 CDD:119392 47/186 (25%)
slc16a12NP_989310.1 2A0111 12..444 CDD:331689 132/596 (22%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D518644at33208
OrthoFinder 1 1.000 - - FOG0000033
OrthoInspector 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11360
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X70
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
66.020

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