DRSC/TRiP Functional Genomics Resources

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Protein Alignment hrm and CG8468

DIOPT Version :9

Sequence 1:NP_001286141.1 Gene:hrm / 35499 FlyBaseID:FBgn0033028 Length:658 Species:Drosophila melanogaster
Sequence 2:NP_610940.1 Gene:CG8468 / 36577 FlyBaseID:FBgn0033913 Length:678 Species:Drosophila melanogaster


Alignment Length:685 Identity:163/685 - (23%)
Similarity:283/685 - (41%) Gaps:112/685 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly    38 NKKDDKEYD--------LVPPDGGWGWLVLLGSCLTNILIPGTIKSFGVLFSEFTDAFNSSPTKA 94
            |.|::.|.:        :||||.||.|:|::.|.|...:|.|.:...|::..:....|..|....
  Fly    24 NIKEENEGEEEIEEAAVVVPPDSGWAWVVMVASFLCCTVIDGIVFCSGLIQEQLMAEFGVSKAYV 88

  Fly    95 AWIPALCYFLYSSLGPVSSILSVKYSYRTVTLLGGASASLGMILSFWASSIEFLYISYGVLVGIG 159
            |::.:|....|...||..|.::.::.:|.||:.|...|::...||::|:|:|:|::.||||.|||
  Fly    89 AFVSSLLSGCYLMAGPFVSAMANRFGFRPVTITGAIFAAICFGLSYFATSVEYLFLIYGVLGGIG 153

  Fly   160 AGLSFPPTVYIVTSYFAKLRGLANGLCISGSALGSIILPPLLRWLLETYGYHGSCLIMGGITLNV 224
            ..:.:.|.|.|:..||.|.|.||.|:.:.||.:|:.:..||.:.||:: |:..:..|.|.|.|:.
  Fly   154 FCMVYIPAVVIIGFYFEKWRALATGVAMCGSGVGTFVFAPLTKILLKS-GWRYTLAIQGIIVLSC 217

  Fly   225 FVAALFYEPVEQHMVRVPRARQALENIPEEEDIGIVMKFE---NVDEPVPKNEPA--DKPL---- 280
            .:..|.:.|::...:.|..         ||.|.....|..   |...|.|:...|  .|||    
  Fly   218 ALFGLAFRPIQPITLSVTN---------EEGDEQEKKKLNGHGNTVAPTPQLHQAAFTKPLPEGR 273

  Fly   281 LPYNSPPSP--LYLPGDERLQF-----------VRSASAAVVQSYSKSGDEFQSRSRKISTPVRL 332
            ..|:.|.|.  .|:...:|..:           :....:...|. ||..:..|.|..:.:||...
  Fly   274 FAYSMPNSAHNTYMGASQRNHYPTAQEIFKGMNLERRPSGTAQG-SKGTELKQLRKSQPTTPNGD 337

  Fly   333 PQRNQTFTPGQLNSQSSLYAVPEGRSSSNKLTL-------------RNSSKSR----LSKRSP-- 378
            ||: .||     |....|..|.|....:....|             |::...|    :.|||.  
  Fly   338 PQQ-LTF-----NLHKELTTVGENEEEAENDNLLETEAKPVTIQARRHTVSGRRPQDIGKRSAAA 396

  Fly   379 ----------STSSFLYVSTPYHGSTLSFQPK-----EFSSHLSLRSMGSSGTGHAGDSTGQDGS 428
                      |:|..:|....:...:|:..|:     ..:.|:|:..:          .|.||  
  Fly   397 AHEAHHGQSHSSSRPMYRDDIFFSGSLTRIPQYQSQTSLAYHMSVTRL----------PTKQD-- 449

  Fly   429 YADVDARG-----QAQQPQRSKFFDLSLLKDPMYLVILISNSTNAISYTNFIILLPSFGEARGFN 488
            ..:...:|     :|.:...|...|.:|||.|.::.:..|.....:.:......|....:|.|.:
  Fly   450 MLEDRQKGCRICPEAVRRTLSTMLDTTLLKSPAFMCLAFSGFLTMMGFFVPFTFLVDRAKAAGMD 514

  Fly   489 KSLSAYLLSVVSATDLIGRIGGSALSDMGYIPKTW-----YFVGGLS--ISGLSLALLPFAWTYS 546
            :..:..:||.:...:...||...:||....:...|     ...||::  .||:.:.... .||::
  Fly   515 EQAAYGVLSGIGVVNTFARIVCGSLSSFPAVKPLWLNNFALTAGGIATICSGIVINTAT-QWTFA 578

  Fly   547 SVCFWCALFGLASGIYVGITAVIMADMLGTERLTSSYGISLFVNGLLQLVGPPLCNYWFEAVNDY 611
                  ..||:....:..:.::|..:::|.|:||::||..:...||....|.|:....:.....|
  Fly   579 ------LFFGICIACFSALRSLIAVELIGLEKLTNAYGFLMLFQGLAATFGSPIAGGLYVMTGSY 637

  Fly   612 NPLFHALGLTLLAGASLWSFMPWINRRKANAEEQL 646
            |..|:..|..:|..|.|...:.|::|.:....|:|
  Fly   638 NAAFYFAGGLILLSAFLCYPLTWVSRWEERRNEKL 672

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
hrmNP_001286141.1 2A0113 49..653 CDD:273325 159/666 (24%)
MFS 59..>234 CDD:119392 54/174 (31%)
MFS <449..633 CDD:119392 41/190 (22%)
CG8468NP_610940.1 MFS 50..>227 CDD:119392 56/177 (32%)
MFS <481..658 CDD:119392 38/183 (21%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 64 1.000 Domainoid score I559
eggNOG 1 0.900 - - E1_KOG2504
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D916876at2759
OrthoFinder 1 1.000 - - FOG0000033
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR11360
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X70
76.920

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