DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment hrm and CG8051

DIOPT Version :9

Sequence 1:NP_001286141.1 Gene:hrm / 35499 FlyBaseID:FBgn0033028 Length:658 Species:Drosophila melanogaster
Sequence 2:NP_001285434.1 Gene:CG8051 / 32925 FlyBaseID:FBgn0031012 Length:616 Species:Drosophila melanogaster


Alignment Length:647 Identity:149/647 - (23%)
Similarity:249/647 - (38%) Gaps:167/647 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly    39 KKDDKE---YDLVPPDGGWGWLVLLGSCLTNILIPGTI-KSFGVLF-----------SEFTDAFN 88
            ||.||.   .|.|.|||||||||.:.|.: |||:...: :.||:||           ||.|...|
  Fly    66 KKRDKSDLGEDFVAPDGGWGWLVSVASGV-NILVTFALAQQFGILFRDRMAGLGISSSELTTIIN 129

  Fly    89 SSPTKAAWIPALCYFLYSSLGPVSSILSVKYSYRTVTLLGGASASLGMILSFWASSIEFLYISYG 153
            :....:|:           .|.::..|..:|:||.|.|:|.....||:....:|.:.....:|:.
  Fly   130 TQIAVSAF-----------TGLLNGPLFRRYTYRVVALVGSVLTFLGLFWMVFADTFAVYIMSFS 183

  Fly   154 VLVGIGAGLSFPPTVYIVTSYFAKLRGLANGLCISGSALGSIILPPLLRWLLETYGYHGSCLIMG 218
            :|.|.|.||:...:...|.:||...|..|.......:.||.|:.|....::|..:|..|:.|:..
  Fly   184 ILYGFGRGLTVSASSLAVNTYFKVKRRTATAFQFGVAGLGPIVCPYFATYMLYEFGVQGTTLLFA 248

  Fly   219 GITLNVFVAALFYEPVEQHMVRVPRARQALENIP-----EEEDIGIVMKFENVDEPVPKNEPADK 278
            |.:|:....:|.|:||:.|:|:..|..:||:.:.     |::|..|:   :||.||         
  Fly   249 GASLHTIACSLIYQPVKWHVVKRDRDAEALQQVQPLAEREDQDEDII---KNVVEP--------- 301

  Fly   279 PLLPYNSPPSPLYLPGDERLQFVRSASAAVVQSYSKSGDEFQSRSRKISTPVRLPQRNQTFTPGQ 343
                                                            .||| ||:.|.    |.
  Fly   302 ------------------------------------------------ETPV-LPRAND----GW 313

  Fly   344 LNSQSSLYAVPEGRSSSNKLTLRNSSKSRLSKRSPSTSSFLYVSTPYHGSTLSFQPKEFSSHLSL 408
            ..|::||.:|              .:::||:....|.|:       .|........|:.:....|
  Fly   314 FGSRASLNSV--------------GTRNRLNTWEKSDSN-------GHVELKRLSSKDSNPGRQL 357

  Fly   409 RSMGSS-------GTGHAGDSTGQDGSYADVDARGQAQQPQRSK------------FFDLSLLKD 454
            ||:..|       .||:..|...|.....:.:.:....:.:|.:            |||:.||:|
  Fly   358 RSISVSHSIKEEEATGYNSDHEVQHTELTEKEKQELEDEKERQRRKKLPFYMKVVIFFDMDLLRD 422

  Fly   455 PMYLVILISNSTNAISYTNFIILLPSFGEARGFNKSLSAYLLSVVSATDLIGRIGGSALSDMGYI 519
            ..|:.:.:..:.......||.||.|......||||...|..:|.:...||:.|.         .|
  Fly   423 ITYVNLAVGITLINFVEINFAILTPFILSDLGFNKDQIALAMSTLGFFDLVVRF---------LI 478

  Fly   520 P----------KTWYFVG--GLSISGLSLALLPFAWTYSSVCFWCALFGLASGIYVGITAVIMAD 572
            |          :|::.||  |:.|..:.|::....:...::..|   .||.........::|:..
  Fly   479 PLITAKINLSNRTFFVVGILGMCIGRMFLSMTSNFYVMMAIFLW---LGLNKAFRTVFWSLIIPS 540

  Fly   573 MLGTERLTSSYGISLFVNGLLQLVGPPLCNYWFEAVNDYNPLFHALGLTLLAGASLWSFMPW 634
            .:..:||.::.|:.|.::|...::..||..    .:.|:..  :|:.|.||....:.:|..|
  Fly   541 YVPLKRLPAAAGLQLLMSGTFSMIFGPLIG----LIRDHTS--YAVTLNLLNALCVMAFAGW 596

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
hrmNP_001286141.1 2A0113 49..653 CDD:273325 143/634 (23%)
MFS 59..>234 CDD:119392 47/186 (25%)
MFS <449..633 CDD:119392 43/195 (22%)
CG8051NP_001285434.1 MFS 86..>266 CDD:119392 52/191 (27%)
MFS <428..598 CDD:119392 40/187 (21%)
MFS_1 440..>572 CDD:284993 33/147 (22%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG2504
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D916876at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR11360
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X70
54.920

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