DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment hrm and slc16a3b

DIOPT Version :9

Sequence 1:NP_001286141.1 Gene:hrm / 35499 FlyBaseID:FBgn0033028 Length:658 Species:Drosophila melanogaster
Sequence 2:NP_997873.1 Gene:slc16a3b / 327276 ZFINID:ZDB-GENE-030131-5487 Length:508 Species:Danio rerio


Alignment Length:610 Identity:121/610 - (19%)
Similarity:215/610 - (35%) Gaps:192/610 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly    50 PDGGWGWLVLLGSCLTNILIPGTIKSFGVLFSEFTDAFNSSPTKAAWIPALCYFLYSSLGPVSSI 114
            |||||||.||.|..:.........|:..|.|.|....|....:..|||.::...:....||:.||
Zfish    16 PDGGWGWAVLFGCFIITGFSYAFPKAVSVFFKELIREFGVGYSDTAWISSILLAMLYGTGPLCSI 80

  Fly   115 LSVKYSYRTVTLLGGASASLGMILSFWASSIEFLYISYGVLVGIGAGLSFPPTVYIVTSYFAKLR 179
            |..::..|.|.::||..|||||:|:.:|::|..:|:..||:.|:|..|:|.|::.::..||::.|
Zfish    81 LVNRFGCRPVMMVGGLFASLGMVLASFATNIIHIYLCTGVITGLGLALNFQPSLIMLNRYFSEKR 145

  Fly   180 GLANGLCISGSALGSIILPPLLRWLLETYGYHGSCLIMGGITLNVFVAALFYEPVEQHMVRVPRA 244
            .|||||..:||.:....|.||.:.|...||:.|..||:||:.||.........|     :..|:.
Zfish   146 PLANGLAAAGSPVALCCLSPLGQVLQYKYGWRGGFLILGGLLLNCCACGALMRP-----LLAPKK 205

  Fly   245 RQALENIPEEEDIGIVMKFENVDEPVPKNEPADKPLLPYNSPPSPLYLPGDERLQFVRSASAAVV 309
            ...:|..|:|                              :.|.|                    
Zfish   206 TSEVEEKPKE------------------------------TKPKP-------------------- 220

  Fly   310 QSYSKSGDEFQSRSRKISTPVRLPQRNQTFTPGQLNSQSSLYAVPEGRSSSNKLTLRNSSKSRLS 374
                                                                             
Zfish   221 ----------------------------------------------------------------- 220

  Fly   375 KRSPSTSSFLYVSTPYHGSTLSFQPKEFSSHLSLRSMGSSGTGHAGDSTGQDGSYADVDARGQAQ 439
                                                                             
Zfish   221 ----------------------------------------------------------------- 220

  Fly   440 QPQRSKFFDLSLLKDPMYLVILISNSTNAISYTNFIILLPSFGEARGFNKSLSAYLLSVVSATDL 504
                 |..|.::.||..:|:..|:.|...:......:.:.|:.:..|...:.||.||:::...|:
Zfish   221 -----KLLDFTVFKDRGFLIYTIAASIMVLGLFVPPVFVVSYAKELGNEDTKSALLLTILGFIDI 280

  Fly   505 IGRIGGSALSDMGYI-PKTWY-FVGGLSISGLSLALLPFAWTYSSVCFWCALFGLASGIYVGITA 567
            ..|.....::.:.:: |:..| |...:..:|::..|..||..|:|:..:|..||::.|:...:..
Zfish   281 FARPTSGIIAGLKWVRPRCVYLFSFAMIFNGIADILGSFAKDYASLVVFCIFFGISYGMVGALQF 345

  Fly   568 VIMADMLGTERLTSSYGISLFVNGLLQLVGPPLCNYWFEAVNDYNPLFHALGLTLLAGASLWSFM 632
            .::..::|||:.:|:.|:.|.|..:..|||||......:|..:|..:|...|..::..|.:.:..
Zfish   346 EVLMAIVGTEKFSSAIGLVLLVEAIAVLVGPPGAGRLLDATKNYMYVFMLAGCEVVLSALVLAIC 410

  Fly   633 PWINRRKANAEEQLDAQIEKAAVDS 657
            ..:..::...:....|::|.|..::
Zfish   411 NLLFIKRKPQQPDPPAKMEMAITET 435

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
hrmNP_001286141.1 2A0113 49..653 CDD:273325 120/604 (20%)
MFS 59..>234 CDD:119392 58/174 (33%)
MFS <449..633 CDD:119392 43/185 (23%)
slc16a3bNP_997873.1 MFS 22..410 CDD:119392 112/577 (19%)
MFS_1 25..376 CDD:284993 102/540 (19%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG2504
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D916876at2759
OrthoFinder 1 1.000 - - FOG0000033
OrthoInspector 1 1.000 - - mtm6360
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11360
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X70
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
87.920

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