DRSC/TRiP Functional Genomics Resources

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Protein Alignment hrm and Slc16a1

DIOPT Version :9

Sequence 1:NP_001286141.1 Gene:hrm / 35499 FlyBaseID:FBgn0033028 Length:658 Species:Drosophila melanogaster
Sequence 2:NP_036848.1 Gene:Slc16a1 / 25027 RGDID:3690 Length:494 Species:Rattus norvegicus


Alignment Length:621 Identity:142/621 - (22%)
Similarity:238/621 - (38%) Gaps:184/621 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly    49 PPDGGWGWLVLLGSCLT---NILIPGTIKSFGVLFSEFTDAFNSSPTKAAWIPALCYFLYSSLGP 110
            ||||||||.|::|:.::   :...|   ||..|.|.|....|:::.::.:||.::...:..:.||
  Rat    13 PPDGGWGWAVVVGAFISIGFSYAFP---KSITVFFKEIEIIFSATTSEVSWISSIMLAVMYAGGP 74

  Fly   111 VSSILSVKYSYRTVTLLGGASASLGMILSFWASSIEFLYISYGVLVGIGAGLSFPPTVYIVTSYF 175
            :||||..||..|.|.:.||..:..|:|.:.:.::::.||...||:.|:|...:..|.:.::..||
  Rat    75 ISSILVNKYGSRPVMIAGGCLSGCGLIAASFCNTVQELYFCIGVIGGLGLAFNLNPALTMIGKYF 139

  Fly   176 AKLRGLANGLCISGSALGSIILPPLLRWLLETYGYHGSCLIMGGITLNVFVAALFYEPVEQHMVR 240
            .|.|.|||||.::||.:....|.||.:.....:|:.||.||:||:.||..||.....|:.     
  Rat   140 YKKRPLANGLAMAGSPVFLSTLAPLNQAFFGIFGWRGSFLILGGLLLNCCVAGSLMRPIG----- 199

  Fly   241 VPRARQALENIPEEEDIGIVMKFENVDEPVPKNEPADKPLLPYNSPPSPLYLPGDERLQFVRSAS 305
                                                                             
  Rat   200 ----------------------------------------------------------------- 199

  Fly   306 AAVVQSYSKSGDEFQSRSRKISTPVRLPQRNQTFTPGQLNSQSSLYAVPEGRSSSNKLTLRNSSK 370
                                       ||:.:.   .:|.|:.||...  |:|.:|...:..|.|
  Rat   200 ---------------------------PQQGKV---EKLKSKESLQEA--GKSDANTDLIGGSPK 232

  Fly   371 SRLSKRSPSTSSFLYVSTPYHGSTLS-FQPKEFSSHLSLRSMGSSGTGHAGDSTGQDGSYADVDA 434
                                 |..|| ||..                                  
  Rat   233 ---------------------GEKLSVFQTV---------------------------------- 242

  Fly   435 RGQAQQPQRSKFFDLSLLKDPMYLVILISNSTNAISYTNFIILLPSFGEARGFNKSLSAYLLSVV 499
                     :||.||||.....:|:.|..|..........::.|.::|:::.|:...||:|||::
  Rat   243 ---------NKFLDLSLFTHRGFLLYLSGNVVMFFGLFTPLVFLSNYGKSKHFSSEKSAFLLSIL 298

  Fly   500 SATDLIGRIG-GSALSDMGYIPKT-WYFVGGLSISGLSLALLPFAWTYSSVCFWCALFGLASGIY 562
            :..|::.|.. |.|.:.....|:. ::|...:..:|:...|.|.:.||...|.:..:||.|.|..
  Rat   299 AFVDMVARPSMGLAANTRWIRPRVQYFFAASVVANGVCHLLAPLSTTYVGFCIYAGVFGFAFGWL 363

  Fly   563 VGITAVIMADMLGTERLTSSYGISLFVNGLLQLVGPPLCNYWFEAVNDYNPLFHALGLTLLAGAS 627
            ..:....:.|::|.:|.:|:.|:...|.....|:||||.....:...||...:.|.|:.|:. |.
  Rat   364 SSVLFETLMDLVGPQRFSSAVGLVTIVECCPVLLGPPLLGRLNDMYGDYKYTYWACGVILII-AG 427

  Fly   628 LWSFMPW-INRR------KANAEEQLDAQIEKAAVD 656
            |:.|:.. ||.|      ||. |::.|.:.::.:.|
  Rat   428 LYLFIGMGINYRLVAKEQKAE-EKKRDGKEDETSTD 462

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
hrmNP_001286141.1 2A0113 49..653 CDD:273325 141/616 (23%)
MFS 59..>234 CDD:119392 56/177 (32%)
MFS <449..633 CDD:119392 49/185 (26%)
Slc16a1NP_036848.1 2A0113 1..462 CDD:273325 141/619 (23%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 446..494 5/18 (28%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 128 1.000 Domainoid score I5173
eggNOG 1 0.900 - - E1_KOG2504
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D518644at33208
OrthoFinder 1 1.000 - - FOG0000033
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X70
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
65.820

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