DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment hrm and Slc16a1

DIOPT Version :9

Sequence 1:NP_001286141.1 Gene:hrm / 35499 FlyBaseID:FBgn0033028 Length:658 Species:Drosophila melanogaster
Sequence 2:NP_033222.1 Gene:Slc16a1 / 20501 MGIID:106013 Length:493 Species:Mus musculus


Alignment Length:627 Identity:145/627 - (23%)
Similarity:240/627 - (38%) Gaps:195/627 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly    49 PPDGGWGWLVLLGSCLT---NILIPGTIKSFGVLFSEFTDAFNSSPTKAAWIPALCYFLYSSLGP 110
            ||||||||.||:|:.::   :...|   ||..|.|.|....|:::.::.:||.::...:..:.||
Mouse    13 PPDGGWGWAVLVGAFISIGFSYAFP---KSITVFFKEIEVIFSATTSEVSWISSIMLAVMYAGGP 74

  Fly   111 VSSILSVKYSYRTVTLLGGASASLGMILSFWASSIEFLYISYGVLVGIGAGLSFPPTVYIVTSYF 175
            :||||..||..|.|.:.||..:..|:|.:.:.::::.||:..||:.|:|...:..|.:.::..||
Mouse    75 ISSILVNKYGSRPVMIAGGCLSGCGLIAASFCNTVQELYLCIGVIGGLGLAFNLNPALTMIGKYF 139

  Fly   176 AKLRGLANGLCISGSALGSIILPPLLRWLLETYGYHGSCLIMGGITLNVFVAALFYEPVEQHMVR 240
            .|.|.|||||.::||.:....|.||.:...:.:.:.||.||:||:.||..||.....|:.     
Mouse   140 YKKRPLANGLAMAGSPVFLSTLAPLNQAFFDIFDWRGSFLILGGLLLNCCVAGSLMRPIG----- 199

  Fly   241 VPRARQALENIPEEEDIGIVMKFENVDEPVPKNEPADKPLLPYNSPPSPLYLPGDERLQFVRSAS 305
                       ||:      :|.|                                         
Mouse   200 -----------PEQ------VKLE----------------------------------------- 206

  Fly   306 AAVVQSYSKSGDEFQSRSRKISTPVRLPQRNQTFTPGQLNSQSSLYAVPEGRSSSNKLTLRNSSK 370
                                                 :|.|:.||...  |:|.:|...:..|.|
Mouse   207 -------------------------------------KLKSKESLQEA--GKSDANTDLIGGSPK 232

  Fly   371 SRLSKRSPSTSSFLYVSTPYHGSTLS-FQPKEFSSHLSLRSMGSSGTGHAGDSTGQDGSYADVDA 434
                                 |..|| ||                                    
Mouse   233 ---------------------GEKLSVFQ------------------------------------ 240

  Fly   435 RGQAQQPQRSKFFDLSLLKDPMYLVILISNSTNAISYTNFIILLPSFGEARGFNKSLSAYLLSVV 499
                   ..:||.||||.....:|:.|..|..........::.|.|:|:::.|:...||:|||::
Mouse   241 -------TINKFLDLSLFTHRGFLLYLSGNVVMFFGLFTPLVFLSSYGKSKDFSSEKSAFLLSIL 298

  Fly   500 SATDLIGRIGGSALSDMGYIPKT--------WYFVGGLSISGLSLALLPFAWTYSSVCFWCALFG 556
            :..|::.|      ..||....|        ::|...:..:|:...|.|.:.||...|.:..:||
Mouse   299 AFVDMVAR------PSMGLAANTKWIRPRIQYFFAASVVANGVCHLLAPLSTTYVGFCVYAGVFG 357

  Fly   557 LASGIYVGITAVIMADMLGTERLTSSYGISLFVNGLLQLVGPPLCNYWFEAVNDYNPLFHALGLT 621
            .|.|....:....:.|::|.:|.:|:.|:...|.....|:||||.....:...||...:.|.|:.
Mouse   358 FAFGWLSSVLFETLMDLIGPQRFSSAVGLVTIVECCPVLLGPPLLGRLNDMYGDYKYTYWACGVI 422

  Fly   622 L-LAGASLWSFMPWINRR------KANAEEQLDAQIEKAAVD 656
            | :||..|:..| .||.|      ||..:::.:.:.::|:.|
Mouse   423 LIIAGIYLFIGM-GINYRLLAKEQKAEEKQKREGKEDEASTD 463

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
hrmNP_001286141.1 2A0113 49..653 CDD:273325 143/622 (23%)
MFS 59..>234 CDD:119392 56/177 (32%)
MFS <449..633 CDD:119392 50/192 (26%)
Slc16a1NP_033222.1 2A0113 1..466 CDD:273325 145/627 (23%)
MFS 20..432 CDD:119392 130/586 (22%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 447..493 3/17 (18%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG2504
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D916876at2759
OrthoFinder 1 1.000 - - FOG0000033
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X70
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
54.820

Return to query results.
Submit another query.