DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment hrm and Y59A8B.21

DIOPT Version :9

Sequence 1:NP_001286141.1 Gene:hrm / 35499 FlyBaseID:FBgn0033028 Length:658 Species:Drosophila melanogaster
Sequence 2:NP_001360616.1 Gene:Y59A8B.21 / 190398 WormBaseID:WBGene00013353 Length:506 Species:Caenorhabditis elegans


Alignment Length:595 Identity:118/595 - (19%)
Similarity:192/595 - (32%) Gaps:177/595 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly    57 LVLLGSCLTNILIPGTIKSFGVL-------FSEFTDAFNSSPT----KAAWIPAL--CYFLYSSL 108
            ::|.|:...::.| ||..:||.:       ...|||     |:    ...|||..  |:.....:
 Worm    26 VILFGAVSIHLTI-GTYHTFGNMLPYMASYMRNFTD-----PSVRIEHMMWIPTFQGCFPFAMVI 84

  Fly   109 GPVSSILSVKYSYRTVTLLGGASASLGMILSFWA--SSIEFLYISYGVLVGIGAGLSFPPTVYIV 171
            |   .:.|..:|.|....:|....:..:.||.:|  .|....:|.||:|.|:|:|:::...|...
 Worm    85 G---GLTSSTFSPRVSAFIGCFLVTSSVALSAYAIQHSFALFFIVYGLLFGLGSGIAYVTAVSTA 146

  Fly   172 TSYFAKLRGLANGLCISGSALGSIILPPLLRWLLETYGYHGSCLIMGGITLNVFVAALFYEPVEQ 236
            .::.....|:.:|:..:|..|.|.|..|:            ..:|:..:.|.......|.:|...
 Worm   147 INWAPDKIGVISGIVAAGFGLSSSIFAPI------------QTMIVNPLNLPATKDGYFLQPELL 199

  Fly   237 HMVRVPRARQALENIPEEEDIGIVMKFENVDEPVPKNEPADKPLLPYNSPPSPLYLPGDERLQ-- 299
            |  |||.....|..|     .||:...               .|:....||..:...|...|.  
 Worm   200 H--RVPALFTKLAVI-----YGIMQAM---------------ALIVVCDPPFRIRHSGLGSLSEY 242

  Fly   300 FVRSASAAVVQSYSKSGDEFQSRSRKISTPVRLPQRNQTFTPGQLNSQSSLYAVPEGRSSSNKLT 364
            ...|:||:..|.||                                                   
 Worm   243 IFSSSSASANQRYS--------------------------------------------------- 256

  Fly   365 LRNSSKSRLSKRSPSTSSFLYVSTPYHGSTLSFQPKEFSSHLSLRSMGSSGTGHAGDSTGQDGSY 429
              ..|.||:.....:|||             :.:||..|:...|..          |....|..|
 Worm   257 --GVSYSRVRLDEVATSS-------------TDEPKSRSTESILEE----------DDEDMDEDY 296

  Fly   430 A------DVDARGQAQQPQRSKFFDLSLLKDPMYLVILISNSTNAISYTNFIILLPSFGEARGFN 488
            .      |.|...|....:        :||.|.:..:..|....:.....|..|..::||:...:
 Worm   297 ERPVFDNDEDTTIQMTSSE--------MLKSPTFYCLFASLFCCSFYANMFYNLYKTYGESFIED 353

  Fly   489 KSLSAYLLSVVSATDLIGRIGGSALSDMGYIPKTWYFVGGLS----ISGLSLALLPFAWTYSSVC 549
            ....|...|:.|..:.|.|||      .||:.....|...||    ::.:.|..:|.......:.
 Worm   354 DMFMAMAFSIASVANAIARIG------WGYLTDRTSFQIALSTATCLASVFLLTMPMTRELGKMA 412

  Fly   550 FWCALFGLASGIYVG------ITAVIMADMLGTERLTSSYG---ISLFVNGLLQLVGPPLCNYWF 605
            |...|.|  :.|.:|      |||.:..  .|.....::||   :|...:|:|...   :..::.
 Worm   413 FLFWLVG--TFICMGATHALFITATVKC--FGNRHKANNYGYLILSTTTSGILLAA---ISQFYL 470

  Fly   606 EAVNDYNPLF 615
            :|:. |..||
 Worm   471 KAIG-YTYLF 479

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
hrmNP_001286141.1 2A0113 49..653 CDD:273325 118/595 (20%)
MFS 59..>234 CDD:119392 42/189 (22%)
MFS <449..633 CDD:119392 40/180 (22%)
Y59A8B.21NP_001360616.1 MFS_OFA_like 23..496 CDD:340911 118/595 (20%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG2504
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D916876at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.820

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