DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment hrm and mct-1

DIOPT Version :9

Sequence 1:NP_001286141.1 Gene:hrm / 35499 FlyBaseID:FBgn0033028 Length:658 Species:Drosophila melanogaster
Sequence 2:NP_503655.2 Gene:mct-1 / 189489 WormBaseID:WBGene00021227 Length:544 Species:Caenorhabditis elegans


Alignment Length:658 Identity:148/658 - (22%)
Similarity:265/658 - (40%) Gaps:187/658 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly    28 ESRHKTVSLINKKDDKEY-----DLVPPDGGWGWLVLLGSCLTNILIPGTIKSFG-VLFSEFTDA 86
            |.:..||::...::.:|.     .:.|||||:||:|:..|.|.|:.:.|.|.:.| :|...:.|.
 Worm    13 EKKEVTVAVTAAENFEEQVEEVGKVTPPDGGYGWVVVAASFLVNMAVDGVIYTCGKILVPIWADQ 77

  Fly    87 FNSSPTKAAWIPAL--CYFLYSSLGPVSSILSVKYSYRTVTLLGGASASLGMILSFWASSIEFLY 149
            |.|:....|.|..|  ||:|   .||::|.....:..|:|.:.|...|:...:||.:||:|..||
 Worm    78 FGSTSVAGAVISILTGCYYL---AGPLASSFVNVFGIRSVAIAGSILATTAFLLSRFASTIWELY 139

  Fly   150 ISYGVLVGIGAGLSFPPTVYIVTSYFAKLRGLANGLCISGSALGSIILPPLLRWLLETYGYH-GS 213
            :.:|||.|||.|..:.|::.|:::||||.|.:|.|:.:.||.:|:::...:...:.:.:|.. ||
 Worm   140 LLFGVLGGIGFGCMYLPSIVILSTYFAKKRSVATGIAVCGSGIGTMVFSTINGPVFDYFGKDVGS 204

  Fly   214 CLI-MGGITLNVFVAALFYEPVE--QHMV-RVPRARQALENIPEEEDIGIVMKFENVDEPVPKNE 274
            .:: :..|.::..:.:|.:.|::  :|.| :|.:..:..|..|||                    
 Worm   205 FMVYLAAIAISGSLFSLLFAPLKATEHQVKKVAKMVRNYEGKPEE-------------------- 249

  Fly   275 PADKPLLPYNSPPSPLYLPGDERLQFVRSASAAVVQSYSKSGDEFQSRSRKISTPVRLPQRN-QT 338
                              |....|:.||              ::.:..:|        |..| .|
 Worm   250 ------------------PTQRLLEDVR--------------NDLEELNR--------PGHNADT 274

  Fly   339 FTPGQLNSQSSLYAVPEGRSSSNKLTLRNSSKSRLSKRSPSTSSFLYVSTPYHGSTLSFQPKEFS 403
            |..|.         .|..||.||.|.         .|.:.|..:.:..:|.:|            
 Worm   275 FYAGN---------APVSRSRSNTLD---------RKAAESAEAHVVHATEHH------------ 309

  Fly   404 SHLSLRSMGSSGTGHAGDSTGQDGSYADVDARGQAQQPQRSKF----------FDLSLLKDPMYL 458
                        |.|                    ...::|||          .|..||..|.::
 Worm   310 ------------TVH--------------------HVVKKSKFTKFKESLCSVLDKDLLFSPSFM 342

  Fly   459 VILISNSTNAISY-TNFIILL-------PSFGEARGFNKSLSAYLLSVVSATDLIGRIGGSALSD 515
            .:.:|.:...:|: ..|:.|.       |.|.:|   ..||.   ::::.|.:::.|||...::|
 Worm   343 TLAVSGTFTVLSFLVPFVYLALAMKQKNPDFTDA---ELSLP---VTLIGAFNIMFRIGCGMVAD 401

  Fly   516 MGYIPKTWYFVGGLSIS-------GLSLALLPFA---WTYSSVCFWCALFGLASGIYVGITAVIM 570
            .   ||    :..|.:|       |.|:..:||.   |.|  |.| |..|......:..:.:||.
 Worm   402 H---PK----MSALQVSNVATIIAGTSMLFVPFCTELWHY--VVF-CIPFSAGVACFAALRSVIC 456

  Fly   571 ADMLGTERLTSSYGISLFVNGLLQLVGPPLCNYWFEAVNDYNPLFHALGLTLLAGASLWSFMP-- 633
            .:::|.|:|::::||.:...|:..:||.|:.....:...:|:..|:.:|:.......:...:|  
 Worm   457 VELIGVEKLSNAFGILMVFMGIGAVVGGPIAAQIKDITGNYDISFYVMGIIFAFSGVMTIRLPEL 521

  Fly   634 --WINRRK 639
              |...:|
 Worm   522 KAWEESKK 529

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
hrmNP_001286141.1 2A0113 49..653 CDD:273325 144/632 (23%)
MFS 59..>234 CDD:119392 54/179 (30%)
MFS <449..633 CDD:119392 45/201 (22%)
mct-1NP_503655.2 MFS_MCT_SLC16 45..519 CDD:340910 136/614 (22%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG2504
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D916876at2759
OrthoFinder 1 1.000 - - FOG0000033
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X70
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
65.820

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