DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment hrm and mct-6

DIOPT Version :9

Sequence 1:NP_001286141.1 Gene:hrm / 35499 FlyBaseID:FBgn0033028 Length:658 Species:Drosophila melanogaster
Sequence 2:NP_510705.1 Gene:mct-6 / 181724 WormBaseID:WBGene00015676 Length:594 Species:Caenorhabditis elegans


Alignment Length:645 Identity:176/645 - (27%)
Similarity:288/645 - (44%) Gaps:121/645 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly    48 VPPDGGWGWLVLLGSCLTNILIPGTIKSFGVLFSEFTDAFNSSPTKAAWIPALCYFLYSSLGPVS 112
            :||||||||:|:|||...::...|.:.|||||.....:.|::|.|.||.|.:|...|....||::
 Worm    16 LPPDGGWGWVVVLGSFFVHVFADGFVYSFGVLVETLMEEFHASNTMAALIISLLTGLTLGSGPLA 80

  Fly   113 SILSVKYSYRTVTLLGGASASLGMILSFWASSIEFLYISYGVLVGIGAGLSFPPTVYIVTSYFAK 177
            |.:..||..|..|:.|...|.:|..||::|:::..:.|:.||::|.|.||.:.|.:.|||.||..
 Worm    81 SAVCNKYGCRITTITGAGVAFVGCALSYFATAMWHIVITVGVIMGTGFGLMYCPAIVIVTMYFEN 145

  Fly   178 LRGLANGLCISGSALGSIILPPLLRWLLETYGYHGSCLIMGGITLNVFVAALF-----------Y 231
            .|.||.|:.::|:.:|:::..|:..:.:..||:.           :||:|.||           :
 Worm   146 KRSLATGIAVAGAGVGTVLFAPINAFFINNYGWR-----------SVFLAFLFILVLCALCGATF 199

  Fly   232 EPVEQHMVRVPRARQALENIPEEEDIGIVMKFENVDEPVPKNEPADKPLLPYNSPPSPLYLPGDE 296
            .|:|  ...||         .|||::...:..|:|.:.....|..:|..|  .||||.|     |
 Worm   200 APLE--FALVP---------DEEEEVNDEVLDEDVKKTAANEEHGEKATL--LSPPSLL-----E 246

  Fly   297 RLQFVRSASAAVVQSYSKSGDEFQSRSRKISTPVRLPQRNQTFTPGQ-----LNSQSSLYAVPEG 356
            |..   |.|:.|    .|:|::.:..|...:..|....|::..|.|:     ||.:...|.    
 Worm   247 RSM---SQSSGV----QKAGEKIRPASSMGAVDVESQPRSRRGTVGERDSGYLNRKDVFYT---- 300

  Fly   357 RSSSNKLTLR-NSSKSRLSKRSPSTSSFLYVSTPYHGSTLSFQPKEFSSHLSLRSMGSSGTGHAG 420
            .|.||....| :..|.|      ||.|.       ||           .|.::.|:.:..||...
 Worm   301 GSISNVAEFREDPDKYR------STGSL-------HG-----------RHTTVGSIPAHSTGRLD 341

  Fly   421 D---STGQDGSYADV-----------DARGQAQQPQRSKFFDLSLLKDPMYLVILISNSTNAISY 471
            |   .:.:|....|:           :..|:......|....|.||.:|.:|:..|||...::.:
 Worm   342 DVREGSEEDSKAMDISEKTNGTDNTDNVEGKNMFKTISNMLSLELLLEPTFLLFAISNLLTSVGF 406

  Fly   472 TNFIILLPSFGEARGFNKSLSAYLLSVVSATDLIGRIGGSALSDMGY-IP----------KTWYF 525
            .:.:..||......|......:.:||....::.:|||....::|... :|          :.|.:
 Worm   407 NSPLYFLPLHATKIGLEPIQGSKVLSAFGVSNTVGRIIFGVVADHKLPLPGGIGNDTARNRLWMY 471

  Fly   526 VGGLSISGLSL-------ALLPFAWTYSSVCFWCALFGLASGIYVGITAVIMADMLGTERLTSSY 583
            ...|:|.||..       ..:|.| |||      ||||.:...|:.:|:||:.|:||.::||:::
 Worm   472 NISLTICGLLTVFCYQFNGFIPLA-TYS------ALFGFSIASYICLTSVILVDLLGLDKLTNAF 529

  Fly   584 GISLFVNGLLQLVGPPLCNYWFEAVNDYNPLFHALGLTLLAGASLWSFMPWINRRKANAE 643
            |:.|...|:..:.|||:..|..:...:|...|...|:.|||...:...:|:. ::||.|:
 Worm   530 GLLLLWQGVGTVFGPPVSGYLADMTGNYTLSFVFCGVNLLASGLMLFGIPFF-QKKAKAK 588

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
hrmNP_001286141.1 2A0113 49..653 CDD:273325 176/644 (27%)
MFS 59..>234 CDD:119392 57/185 (31%)
MFS <449..633 CDD:119392 54/201 (27%)
mct-6NP_510705.1 MFS_MCT_SLC16 23..579 CDD:340910 166/626 (27%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG2504
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D916876at2759
OrthoFinder 1 1.000 - - FOG0000033
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X70
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
54.820

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